Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,282,661 – 8,282,769 |
Length | 108 |
Max. P | 0.652354 |
Location | 8,282,661 – 8,282,769 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.14 |
Mean single sequence MFE | -41.02 |
Consensus MFE | -25.42 |
Energy contribution | -27.98 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.19 |
Mean z-score | -2.11 |
Structure conservation index | 0.62 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8282661 108 - 27905053 CUGCUUCUUAGUUGGCGUUGCCUUCGGCGAAUGCUCACUGAUCACCUCGUACUGGUGGUCCAGGUGCUGAGUGCGCACACAACACCAGCUCUUUGAAUUCUGAGAGCA .........(((.(((((((((...))).)))))).)))(((((((.......)))))))..((((.((.((....)).)).)))).((((((.(....).)))))). ( -37.80) >DroGri_CAF1 1738 105 - 1 UUGCUUGUUGGUGGCC---AACUUCGGUGACUGCUCACUGAUGACAUCAAACUGAUUGUCCAGAUGCUGGGUGCGCACACACACCCAACUCUUCUGAUUCGGCGAGCA .((((((((((.....---....(((((((....))))))).((((((.....)).))))((((.(.((((((.(....).)))))).)...))))..)))))))))) ( -35.90) >DroSim_CAF1 319 108 - 1 UUGCUUCUUAGUGGGCGUUGCCUUCGGCGAGUGCUCACUGAUCACCUCGUAUUGGUGGUCCAGGUGCUGAGUGCGAACACAACACCAGCUCUUUGAAUUCUGAGAGCA .........(((((((((((((...))))).))))))))(((((((.......)))))))..((((.((.((....)).)).)))).((((((.(....).)))))). ( -43.00) >DroEre_CAF1 311 108 - 1 CUGCUUCUUAGUGGGCGUGGCCUUCGGCGAGUGCUCGCUGAUCACCUCGUACUGGUGGUCCAGGUGCUGAGUGCGCACACAGCACCAGCUCUUUGAAUUCUGAGAGCA .........(((((((((.(((...))).).))))))))(((((((.......)))))))..(((((((.((....)).))))))).((((((.(....).)))))). ( -47.30) >DroYak_CAF1 312 108 - 1 CUGCUUCUUAGUGGGCGUGGCCUUCGGCGAAUGCUCGCUGAUCACCUCGAACUGGUGGUCCAGGUGCUGAGUGCGCACACAGCACCAGCUCUUGGAAUUCUGAGAGCA .........(((((((((.(((...)))..)))))))))(((((((.......)))))))..(((((((.((....)).))))))).(((((..(....)..))))). ( -51.80) >DroAna_CAF1 323 97 - 1 --GCUUAUU---------GGCCUUCGGCGACUGCUCACUUAUGACCUCGAACUGGUGGUCCAGGUGCUGGGUUCGAACGCACAGCCAGCUCCUCGGAUUCUGGGAGCA --(((....---------)))....(((...(((........(((((.(..((((....))))...).))))).....)))..))).(((((.(((...)))))))). ( -30.32) >consensus CUGCUUCUUAGUGGGCGUGGCCUUCGGCGAAUGCUCACUGAUCACCUCGAACUGGUGGUCCAGGUGCUGAGUGCGCACACAACACCAGCUCUUUGAAUUCUGAGAGCA .........((((((((..(((...)))...))))))))(((((((.......)))))))..((((.((.((....)).)).)))).((((((........)))))). (-25.42 = -27.98 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:59 2006