Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,276,104 – 8,276,220 |
Length | 116 |
Max. P | 0.564336 |
Location | 8,276,104 – 8,276,220 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.93 |
Mean single sequence MFE | -22.39 |
Consensus MFE | -13.17 |
Energy contribution | -12.73 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.19 |
Mean z-score | -1.68 |
Structure conservation index | 0.59 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8276104 116 - 27905053 GUUAUGUUUCUAAAGAAAUAUUAAUUGAAUAAAACCGAUUCCACAAUAAACAAUCAUAACGUGCUAGCUAU----AAAUCAGUUUGAACCCAUGGGUUGUGGGAAAACCAGUGUAAGAAA ...(((((((....))))))).................((((((..(((((.........((....))...----......)))))((((....))))))))))................ ( -16.17) >DroEre_CAF1 679 109 - 1 -----------AAAGAUGCAUUCAUUGAAUUAAACUGAUUUUACUAUAGAAAAUCAUAACGUGUCAGUUAUAUGAAAAUUAGUUUGAACCUAUGGGGUGUGGGAAAAGAAGUGUCAAAAU -----------...(((((.(((......(((((((((((((..(((((.....(((...)))....)))))..))))))))))))).(((((.....)))))....))))))))..... ( -23.80) >DroYak_CAF1 735 109 - 1 -----------ACAGAUGCACUAAUUGAAUAAAACUGAUUCUACGAUAGACAAUCAUAACGUGUCUGUUAUGUGUAAAUCAGUUUGAACCUAUGGGUUGUGGGAAAAUAAGUGUAAGAAA -----------.....((((((.(((.....(((((((((.(((((((((((.........))))))))....))))))))))))...(((((.....)))))..))).))))))..... ( -27.20) >consensus ___________AAAGAUGCAUUAAUUGAAUAAAACUGAUUCUACAAUAGACAAUCAUAACGUGUCAGUUAU_UG_AAAUCAGUUUGAACCUAUGGGUUGUGGGAAAACAAGUGUAAGAAA .................(((((.........(((((((((.....((((.....(((...)))....)))).....)))))))))...(((((.....)))))......)))))...... (-13.17 = -12.73 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:57 2006