Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,264,631 – 8,264,741 |
Length | 110 |
Max. P | 0.990297 |
Location | 8,264,631 – 8,264,741 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.94 |
Mean single sequence MFE | -36.96 |
Consensus MFE | -17.32 |
Energy contribution | -19.85 |
Covariance contribution | 2.53 |
Combinations/Pair | 1.13 |
Mean z-score | -2.58 |
Structure conservation index | 0.47 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8264631 110 + 27905053 UUAAUGUUCAAAAUGCUCUGCUCCAGUCGCCAGUUUUGGCAGAUGUGCAUGGCAUCCGCCAGAAAGCUGGACACGAUCA-GCAUCCUGGCCAGAGUUGAAAGCAGC---------AUCUU ...((((((.....((((((........((((((((((((.(((((.....))))).))))))).(((((......)))-))...))))))))))).....).)))---------))... ( -35.90) >DroSec_CAF1 4517 110 + 1 UUAAUGUUCAGAAUGCUCUGCUCCAGUCGCCAGUUUUGGCAGAUAUACAUGGCAUCCGCCAGAAAGCUGGACACGACCA-GCAUCCUGGACAGAAUUAAAAGCAGC---------ACAUU ....(((((((.((((((((.((((((.(((......))).........((((....))))....)))))))).))...-)))).)))))))..............---------..... ( -33.00) >DroSim_CAF1 4720 110 + 1 UUAAUGUUCAGAAUGCUCUGCUCCAGUCGCCAGUUUUGGCAGAUGUAAAUGGCAUCCGCCAGAAAGCUGGACACGACCA-GCAUCCUGGACAGAGUUAAAAGCAGC---------ACAUU ....((((......((((((.(((((.......(((((((.(((((.....))))).))))))).(((((......)))-))...)))))))))))....))))..---------..... ( -40.70) >DroEre_CAF1 2904 110 + 1 UUCAUGUUCAGGAUGCUCUGCUCCAGUCGCCAGUAUUGGCAGAUGUGCAGAGCAUCCGCCAGAAAGCUGGACACGAUAA-GCAUCCUGGCAAAAGUUGCAAGCAGG---------AUCUU .((.(((((((((((((((((....((((((......))).)))..)))))))))))((......)))))))).)).((-(.(((((((((.....)))...))))---------))))) ( -46.30) >DroYak_CAF1 4105 110 + 1 UUCAUGUUCAGGAUGCUCUGCUCCAGUCGCCAAUACUGGCAGAUGUGCAGGGCAUCCGCCAGAAAGCUGGACACGAUAA-GCAUCCUGGCAAAAGUUGCAAGCAGG---------AUCUU .((.(((((((((((((((((....(((((((....)))).)))..)))))))))))((......)))))))).)).((-(.(((((((((.....)))...))))---------))))) ( -46.00) >DroAna_CAF1 6908 119 + 1 GUCAAAUUCAGCUCCAUCGCCUUGAAGCGACAGUUCUUGAUGCAGUCCAUUCCAUCCGCCACAAAAUUGGACACGAUCAUGCAGCGCG-CCACAGCCAAAAAGAUAGACUUAAGAAGUUU (((.......(((.((((((......)))).......((((...(((((..................)))))...)))))).)))((.-.....))..........)))........... ( -19.87) >consensus UUAAUGUUCAGAAUGCUCUGCUCCAGUCGCCAGUUUUGGCAGAUGUGCAUGGCAUCCGCCAGAAAGCUGGACACGAUCA_GCAUCCUGGCCAGAGUUAAAAGCAGC_________AUCUU .......((((.((((((((.((((((......(((((((.(((((.....))))).))))))).)))))))).))....)))).))))............................... (-17.32 = -19.85 + 2.53)
Location | 8,264,631 – 8,264,741 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.94 |
Mean single sequence MFE | -40.47 |
Consensus MFE | -21.77 |
Energy contribution | -22.92 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.17 |
Mean z-score | -2.88 |
Structure conservation index | 0.54 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8264631 110 - 27905053 AAGAU---------GCUGCUUUCAACUCUGGCCAGGAUGC-UGAUCGUGUCCAGCUUUCUGGCGGAUGCCAUGCACAUCUGCCAAAACUGGCGACUGGAGCAGAGCAUUUUGAACAUUAA (((((---------(((((((.((....(.(((((((.((-((........))))..))(((((((((.......)))))))))...))))).).))))))..))))))))......... ( -38.00) >DroSec_CAF1 4517 110 - 1 AAUGU---------GCUGCUUUUAAUUCUGUCCAGGAUGC-UGGUCGUGUCCAGCUUUCUGGCGGAUGCCAUGUAUAUCUGCCAAAACUGGCGACUGGAGCAGAGCAUUCUGAACAUUAA (((((---------.(((((......((((.((((((.((-(((......))))).))))))))))..(((.((.....(((((....))))))))))))))).)))))........... ( -39.50) >DroSim_CAF1 4720 110 - 1 AAUGU---------GCUGCUUUUAACUCUGUCCAGGAUGC-UGGUCGUGUCCAGCUUUCUGGCGGAUGCCAUUUACAUCUGCCAAAACUGGCGACUGGAGCAGAGCAUUCUGAACAUUAA (((((---------.(((((((....((.(.((((((.((-(((......)))))..))(((((((((.......)))))))))...)))))))..))))))).)))))........... ( -40.30) >DroEre_CAF1 2904 110 - 1 AAGAU---------CCUGCUUGCAACUUUUGCCAGGAUGC-UUAUCGUGUCCAGCUUUCUGGCGGAUGCUCUGCACAUCUGCCAAUACUGGCGACUGGAGCAGAGCAUCCUGAACAUGAA (((((---------((((...(((.....))))))))).)-)).((((((.(((((....)))(((((((((((.((..(((((....)))))..))..))))))))))))).)))))). ( -49.30) >DroYak_CAF1 4105 110 - 1 AAGAU---------CCUGCUUGCAACUUUUGCCAGGAUGC-UUAUCGUGUCCAGCUUUCUGGCGGAUGCCCUGCACAUCUGCCAGUAUUGGCGACUGGAGCAGAGCAUCCUGAACAUGAA (((((---------((((...(((.....))))))))).)-)).((((((.(((((....)))((((((.((((.((..((((......))))..))..)))).)))))))).)))))). ( -43.90) >DroAna_CAF1 6908 119 - 1 AAACUUCUUAAGUCUAUCUUUUUGGCUGUGG-CGCGCUGCAUGAUCGUGUCCAAUUUUGUGGCGGAUGGAAUGGACUGCAUCAAGAACUGUCGCUUCAAGGCGAUGGAGCUGAAUUUGAC ...........(((......((..((((..(-....)..).((((.(((((((.(((..(.....)..)))))))).))))))....((((((((....)))))))))))..))...))) ( -31.80) >consensus AAGAU_________GCUGCUUUCAACUCUGGCCAGGAUGC_UGAUCGUGUCCAGCUUUCUGGCGGAUGCCAUGCACAUCUGCCAAAACUGGCGACUGGAGCAGAGCAUUCUGAACAUGAA ...............((((((.............((((((......)))))).(((...(((((((((.......))))))))).....))).....))))))................. (-21.77 = -22.92 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:52 2006