Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,243,284 – 8,243,382 |
Length | 98 |
Max. P | 0.914228 |
Location | 8,243,284 – 8,243,382 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.66 |
Mean single sequence MFE | -38.03 |
Consensus MFE | -30.47 |
Energy contribution | -29.95 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.48 |
Mean z-score | -1.88 |
Structure conservation index | 0.80 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8243284 98 - 27905053 ACCGGUUGGGAACUUUUUGGCCGGCUUUGCCAUUGGAAUACGCAUGGGGGAACUGGCUACAGUUAAGACCACCGGUAGUGUUCUUCUGGGAGCCGAAG ...(((..(((...)))..)))(((((..(((..(((((((...(((((.(((((....)))))....)).)))...)))))))..)))))))).... ( -38.20) >DroSec_CAF1 900 98 - 1 ACCGGUUGGGAACUUCUUGACCGGCUUUAUUACUGGAAUACGCAUGGGGGAACUGGCUACAGUUACGCCCACCGGCAGUGAUCUUCUGGGAGCCGAAG ...(((..((.....))..)))((((((......(((.(((((.((((.((((((....))))).).))))...)).))).)))....)))))).... ( -37.30) >DroSim_CAF1 809 98 - 1 ACCGGUUGGGAACUUCUUGACCGGCUUUACCAUUGGCAUACGCAUGGGGGAACUGGCUACAGUUACGCCCACCGGCAGUGUUCUUCUGGGAGCCGAAG ...(((..((.....))..)))(((((..(((..((.((((((.((((.((((((....))))).).))))...)).)))).))..)))))))).... ( -40.00) >DroEre_CAF1 874 98 - 1 ACCAGUUGGGAAUUUCUUGGCCGGCUUCACCAUUGGGAUACGCAUGGGGGAACUGGCCACAGUUACACCCACCGGCAGUGUUCUUCUGGGAGUCGAAG ....((..((.....))..))(((((.(.(((..(((((((((.((((..(((((....)))))...))))...)).)))))))..)))))))))... ( -38.00) >DroYak_CAF1 899 98 - 1 UCCGGCUGGGAAUUUCUUGGCCGGCUUCACCAUUGGGAUGCGCAUGGGGGAACUGGACACAGUUACACCCAUCGGCAGUGUUCUUCUGGGGGUCGAAG .(((((..((.....))..)))))(((((((...((((((((((((((..(((((....)))))...)))))..)).)))))))......))).)))) ( -41.90) >DroAna_CAF1 861 98 - 1 AUUUGCAGGCCGCUUGUUCGAGGGCUUCAUAAGGGGACUUCGCAGAGGGGAUCUUGCUACAGUUACGCCCACUGGCAACACUCUCUUUUGCGCAGCAG ...((((((((.(((....))))))))...(((....)))(((((((((((..((((..((((.......))))))))...)))))))))))..))). ( -32.80) >consensus ACCGGUUGGGAACUUCUUGGCCGGCUUCACCAUUGGAAUACGCAUGGGGGAACUGGCUACAGUUACGCCCACCGGCAGUGUUCUUCUGGGAGCCGAAG ...(((..((.....))..)))(((((..(((..(((((((((.(((((((((((....)))))...))).))))).)))))))..)))))))).... (-30.47 = -29.95 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:45 2006