Locus 3128

Sequence ID 3R_DroMel_CAF1
Location 8,240,443 – 8,240,558
Length 115
Max. P 0.519694
window5069

overview

Window 9

Location 8,240,443 – 8,240,558
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 93.04
Mean single sequence MFE -22.60
Consensus MFE -18.95
Energy contribution -19.15
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.84
SVM decision value -0.03
SVM RNA-class probability 0.519694
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8240443 115 + 27905053
CAACACGGCUGAUAUGGUUGUGAAAAAUGCACUGAGUAAAUAACGUACAUCGAUGUGGUCCAAAUGAUAAAGCAAAACAACAUCAUUAUUUCGAGCACAACGAAAGUAAACGAAC
...(((((((.....))))))).....(((.....(((.......))).(((.((((.((.(((((((................))))))).)).)))).)))..)))....... ( -21.29)
>DroSec_CAF1 7931 115 + 1
CAGCACGGCUGAUAUGGUUGUGAAAAAUGCACUGAGUAAAUAACGUACAUCGAUGUGAUCCAAAUGAUUAAGCAAAACAAUAUCAUUAUUUCGAGCACAACGAAAGUAAACGAAC
...(((((((.....))))))).....(((.....(((.......))).(((.((((.((.(((((((................))))))).)).)))).)))..)))....... ( -18.69)
>DroSim_CAF1 7927 115 + 1
CAGCACGGCUGAUAUGGUUGUGAAAAAUGCACUGAGUAAAUAACGUACAUCGAUGUGGUCCAAAUGAUUAAGCAAAGCAACAUCAUUAUUUCGAGCACAACGAAAGUAAACGAAC
...(((((((.....))))))).....(((.....(((.......))).(((.((((.((.(((((((...((...))......))))))).)).)))).)))..)))....... ( -20.80)
>DroEre_CAF1 7815 115 + 1
CAGCACGGCUGAUAUGGUUGUGAAAAAUGCACUAAGUAAACAACGUACAUCGAUGUGGCCAAAAUGAUUAAGCGAAAUAAAAGCAUUAUUUAGACCACAACGAAAGUAAACUCAC
...(((((((.....))))))).....(((.....(((.......))).(((.(((((.(.(((((((...((.........))))))))).).))))).)))..)))....... ( -22.70)
>DroYak_CAF1 7910 115 + 1
CAGCACGGCUGAUAUGGUUGUGAAAAAUGCACUGAGUAAAUAACGUACAUCGAUGUGGUCCAAAUGAUUAAGCGAAAUAAAAGCAUUAUUUAGACCACAACGAAAGUAAACGCAC
...(((((((.....))))))).....(((.....(((.......))).(((.(((((((.(((((((...((.........))))))))).))))))).)))........))). ( -29.50)
>consensus
CAGCACGGCUGAUAUGGUUGUGAAAAAUGCACUGAGUAAAUAACGUACAUCGAUGUGGUCCAAAUGAUUAAGCAAAACAAAAUCAUUAUUUCGAGCACAACGAAAGUAAACGAAC
...(((((((.....))))))).....(((.....(((.......))).(((.((((.((.(((((((................))))))).)).)))).)))..)))....... (-18.95 = -19.15 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:43 2006