Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,235,081 – 8,235,189 |
Length | 108 |
Max. P | 0.660369 |
Location | 8,235,081 – 8,235,189 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 75.86 |
Mean single sequence MFE | -29.85 |
Consensus MFE | -17.33 |
Energy contribution | -17.66 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.11 |
Mean z-score | -1.54 |
Structure conservation index | 0.58 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8235081 108 + 27905053 UUUCCACGCUGGCCACAUUCAAUUACGUCAUGGCCACUUUGACUGGUCCCGGACUGAUGCCAAAACAGUGGCAUCCCAAGGUAACCGGAG----AA-CCA---GAAGCGCACGGCA ...((.(((((((((....(......)...))))).......((((((((((((((((((((......)))))))....)))..)))).)----.)-)))---).))))...)).. ( -36.70) >DroVir_CAF1 26712 113 + 1 UCUCCACGUUGGCCACAUUCAAUUACAUCAUGGCCACGGUGACAGGUCCGGGCCUGCUGCCAAAACAAUGGCAGCCAAAGGUAA-ACCAAUACAAA-CGUUGUCCAGCCCC-AAGA .......((((((.((...............((((.(((........))))))).(((((((......)))))))....((...-.))........-.)).).)))))...-.... ( -33.20) >DroPse_CAF1 104 102 + 1 UCUCCACGCUGGCCACAUUCAAUUACGUCAUGGCCACGCUGACAGGUCCCGGCCUACUGCCAAGACAAUGGCAGCCAAAGGUAAAUAACG--C-AA-GUA---GAAGC-C------ ....((.((((((((....(......)...)))))).))))..((((....)))).((((((......)))))).....(((.....((.--.-..-)).---...))-)------ ( -27.90) >DroMoj_CAF1 4187 112 + 1 UCUCCACGCUGGCCACAUUCAAUUACAUCAUGGCCACGCUGACAGGUCCGGGUCUACUGCCCAAACAAUGGCAGCCAAAGGUAACAGCAAUACAAA-CGA---CAAUCCCUCGGAA ..(((..(.((((((...............)))))))((((......((.((....(((((........)))))))...))...))))........-...---.........))). ( -26.26) >DroAna_CAF1 2866 98 + 1 UCUCCACUUUGGCCACUUUCAAUUACGUCAUGGCCACGCUGACAGGUCCCGGCCUGAUGCCCAAACAGUGGCAACCGAAGGUAACAGAGG----AAGCCA---GA----------- ......(((((((((((........(((((.((((..(((....)))...))))))))).......)))))).(((...)))..))))).----......---..----------- ( -28.46) >DroPer_CAF1 104 95 + 1 UCUCCACGCUGGCCACAUUCAAUUACGUCAUGGCCACGCUGACAGGUCCCGGCCUACUGCCAAGACAAUGGCAGCCAAAGGUAAAUAACG--C-AA-GU----------------- ...((..((((((((....(......)...)))))).))....((((....)))).((((((......)))))).....))......((.--.-..-))----------------- ( -26.60) >consensus UCUCCACGCUGGCCACAUUCAAUUACGUCAUGGCCACGCUGACAGGUCCCGGCCUACUGCCAAAACAAUGGCAGCCAAAGGUAACAGAAG__C_AA_CCA___GAAGC_C______ ....((((.((((((...............)))))))).))..........((((.(((((........)))))....)))).................................. (-17.33 = -17.66 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:40 2006