Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,217,315 – 8,217,414 |
Length | 99 |
Max. P | 0.531498 |
Location | 8,217,315 – 8,217,414 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 77.99 |
Mean single sequence MFE | -36.08 |
Consensus MFE | -18.26 |
Energy contribution | -18.68 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.35 |
Mean z-score | -1.85 |
Structure conservation index | 0.51 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8217315 99 - 27905053 ACUGCUUAAUCUUAAGGCCCAGGCUGGAAUUGUACCCGUGGAUUACUGCGUCAAUAUGGUGCUGACCUGCGCUUGGAACACGGCCCGGGAUACAAGUAU (((.((((....)))).(((.(((((....(((.((((..(....)..)).......(((((......))))).)).)))))))).))).....))).. ( -26.20) >DroSim_CAF1 9734 99 - 1 ACUGCUUAAUCUCAAGGCCCAGGCUGGAAUUGUACCCGUGGACUACUGCGUCAAUAUGGUGCUGACCUGCGCUUGGAACACGGCCCGGGAUACUAGCAU ..((((..(((((..(((((((((.((....(((((....(((......))).....)))))...))...)))))......)))).)))))...)))). ( -30.50) >DroEre_CAF1 9887 99 - 1 ACUGCUUAAUCUUAAGGCCCAGGCUGGCAUUGUACCCGUGGAUUACUGCGUCAAUAUGGUGCUGGCCUGCGCUUGGAACACGGCCCGGGAUAGUAGCAU .(((((..(((((.((((.(((((..((((..((..((..(....)..))....))..))))..))))).))))((........))))))))))))... ( -38.20) >DroWil_CAF1 94229 95 - 1 CUGGGCUAACUAUCAGGCACAGGCUGGCAUCGUGCCCGUAGACUAUUGCGCCAACAUGGCCUUGGUCUGUGCCUGGAAAACAGCACAAGAGACGA---- ((..(((.....((((((((((((((((...((...(((((....)))))...))...)))..))))))))))))).....)))...))......---- ( -34.80) >DroYak_CAF1 10198 99 - 1 UCUGCUUAAUCUCAAGGCGCAGGCUGGCAUUGUACCCGUAGAUUACUGCGUCAAUAUGGUGCUGGCCUGCGCUUGGAACACGGCCCGGGAUAGUAGCAU ..((((..(((((.((((((((((..((((..((..(((((....)))))....))..))))..))))))))))((........)))))))...)))). ( -48.20) >DroAna_CAF1 67788 95 - 1 GAGGCUCAACGUUAAGGCCCAGGCUGGGAUUGUGCCAGUGGACUACUGUGUGAACAUGGUCCUUACUUGCGCCUGGCAUACGGCCUUGGAGAGUC---- ..(((((....((((((((...((..((....(((.(((((((((.(((....)))))))))..))).)))))..))....)))))))).)))))---- ( -38.60) >consensus ACUGCUUAAUCUUAAGGCCCAGGCUGGCAUUGUACCCGUGGACUACUGCGUCAAUAUGGUGCUGACCUGCGCUUGGAACACGGCCCGGGAUACUAGCAU .................(((.(((((....(((.(((((((....))))).......(((((......))))).)).)))))))).))).......... (-18.26 = -18.68 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:36 2006