Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,210,162 – 1,210,282 |
Length | 120 |
Max. P | 0.866058 |
Location | 1,210,162 – 1,210,282 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -47.70 |
Consensus MFE | -31.86 |
Energy contribution | -30.37 |
Covariance contribution | -1.49 |
Combinations/Pair | 1.44 |
Mean z-score | -1.97 |
Structure conservation index | 0.67 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1210162 120 - 27905053 UUCUAUCGCGCACCUCCAAGGAGGGCAAGCGCUUUGUAAAGGUGAUCAUCGAUCUGGCGGCGGUGGCGGCCCAGGUGACGGGCCUGGUGAUCUGGCCGCUGCUGGAGAACCGCCGUGAGC ....(((((((.((((....))))))...((((..((...(((....))).))..)))))))))((((((((.(....)))))).(((..((..((....))..))..))))))...... ( -53.60) >DroVir_CAF1 1147 120 - 1 UGCUUUCGCGAACCUCCAAGGAGGGUAAACGCUUCAUUAAAGUCAUCAUCGAUCUGGCUGCAAUUGCAGCGCAGGUCACCGGCCUGGUUAUCUGGCCCCUACUGGAGAACCGGCGCGAAC ....(((((((.((((....))))......((((.....))))..))...(((((((((((....))))).))))))....(((.((((.((..(......)..)).)))))))))))). ( -45.80) >DroGri_CAF1 1250 120 - 1 UGCUCUCGCGCACCUCGAAGGAGGGCAAACGAUUCAUUAAGAUCAUCAUUGAUCUGGCUGCGGUAGCAGCACAGGUAACUGGUCUCGUCAUCUGGCCGCUGUUGGAGAAUCGUCGCGAAC .....((((((.((((....))))))..(((((((....((((((......((((((((((....))))).)))))...)))))).....((..((....))..))))))))).)))).. ( -49.40) >DroWil_CAF1 1190 120 - 1 UUCUCUCGCGCACUUCGAAGGAGGGCAAACGCUUUGUGAAAGUGAUUAUCGAUCUGGCAGCAAUCGCUGCUCAGGUAACUGGUCUCAUAAUUUGGCCAUUAUUGGAGAAUCGUCGAGAGU ..((((((((..((((((..(.((.((((....((((((....(((((...((((((((((....))))).)))))...))))))))))))))).)).)..))))))...)).)))))). ( -42.20) >DroMoj_CAF1 1150 120 - 1 UGUUGUCACGCACUUCUAAGGAGGGCAAACGCUUCAUCAAAGUCAUUAUCGAUCUGGCUGCCGUUGCUGCCCAGGUCACGGGCCUCGUUAUCUGGCCACUGCUGGAGAAUCGACGCGAGC .((.(((..((.((((....)))))).....(((((.((...........((((((((.((....)).).)))))))...((((.........))))..)).)))))....))))).... ( -35.00) >DroAna_CAF1 1165 120 - 1 UGCUUUCCCGCACCUCCAAGGAGGGCAAGCGAUUCGUGAAGGUCAUCAUCGACUUGGCAGCAGUGGCGGCCCAGGUAACGGGCCUGGUCAUCUGGCCACUGCUGGAGAAUCGUCGGGAGC ....(((((((.((((....))))))..(((((((....(((((......)))))..(((((((((((((((.......))))).((....)).))))))))))..))))))).))))). ( -60.20) >consensus UGCUCUCGCGCACCUCCAAGGAGGGCAAACGCUUCAUGAAAGUCAUCAUCGAUCUGGCUGCAGUGGCAGCCCAGGUAACGGGCCUCGUCAUCUGGCCACUGCUGGAGAAUCGUCGCGAGC .....((((((.((((....))))))..(((.(((.....(((........(((((((.((....)).)).)))))....((((.........))))...)))...))).))).)))).. (-31.86 = -30.37 + -1.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:07 2006