Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,211,178 – 8,211,288 |
Length | 110 |
Max. P | 0.657447 |
Location | 8,211,178 – 8,211,288 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.69 |
Mean single sequence MFE | -28.83 |
Consensus MFE | -17.88 |
Energy contribution | -18.17 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.38 |
Mean z-score | -1.54 |
Structure conservation index | 0.62 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8211178 110 + 27905053 UACGAGGAACUCAAUGCCAACAAGGCCAAUAUGUUGGCCGAUAUGUUCAAGGCCAAGAUGAAUCAAUCGGCGGGCUAACAGUUCUUUAAAUUAGUGUUACAGUAGCGAAA- ...((((((((....(((((((.((((((....))))))....))))....(((..(((......)))))).)))....)))))))).......(((((...)))))...- ( -29.00) >DroGri_CAF1 4484 104 + 1 UACGAGGAAUUGAAUGGCAGCAAGGCUGUAAUGUUGGCGGACAUGUUCAAGGCCAAGAUGAAUCAAACAGGUGGCUCCUAAUUAUACAUAUCUAU------AUAUCCGUA- ((((((((.((((((.(((((...))))).(((((....))))))))))).((((...((.......))..))))))))...((((......)))------)....))))- ( -22.00) >DroSec_CAF1 18053 108 + 1 UACGAGGAACUCAAUGCCAAUAAGGCCAAUAUGCUGGCCGAUAUGUUCAAGGCCAAGAUGAAUCAAUCGGCGCACUGA---UUCUUAAAAUCAGUGUUACAGUAGCGAAAA ...(((...)))...(((.....))).....(((((((((((..(((((.........)))))..))))))(((((((---((.....)))))))))..)))))....... ( -31.50) >DroSim_CAF1 3682 98 + 1 UACGAGGAACUCAAUGCCAACAAGGCCAAUAUGCUGGCCGAUAUGUUCAAGGCCAAGAUGAAUCAAUCGGCGGGCUAAUAGUUCUUUAAAUCAGUGUU------------- ...((((((((....(((.....)))......(((.((((((..(((((.........)))))..)))))).)))....))))))))...........------------- ( -28.60) >DroEre_CAF1 3402 110 + 1 UACGAGGAGCUGAAUGCCAACAAGGCCAAUAUGCUGGCCGAUAUGUUCAAGGCCAAGAUGAACCAGUCUGCGGGCUAGCUGUUCUUUAAAUCAGUGUUAUAGUAGCGAAC- ...(((.(((((...(((..((.(((((......)))))(((..(((((.........)))))..)))))..)))))))).)))..........(((((...)))))...- ( -28.40) >DroYak_CAF1 3698 110 + 1 UACGAGGAGCUGAAUACCAACAAGGCCAACAUGCUGGCCGAUAUGUUCAAGGCCAAGAUGAACCAAUCUGCGGGCUAGCAGUUCCUUAAAUCCGUGUUAUAGUAGCAAAC- ...(((((((((......((((.(((((......)))))....))))...((((.((((......))))...))))..))))))))).......(((((...)))))...- ( -33.50) >consensus UACGAGGAACUCAAUGCCAACAAGGCCAAUAUGCUGGCCGAUAUGUUCAAGGCCAAGAUGAAUCAAUCGGCGGGCUAACAGUUCUUUAAAUCAGUGUUA_AGUAGCGAAA_ ...((((((((.......((((.(((((......)))))....))))...((((..(((......)))....))))...))))))))........................ (-17.88 = -18.17 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:33 2006