Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,206,098 – 8,206,298 |
Length | 200 |
Max. P | 0.942422 |
Location | 8,206,098 – 8,206,218 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -49.45 |
Consensus MFE | -41.56 |
Energy contribution | -42.88 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.07 |
Mean z-score | -2.44 |
Structure conservation index | 0.84 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8206098 120 - 27905053 AUGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCAGGAAGGUGUCCAGGUGGCCAAAGGCGCUGUCCACUUUCUGCAUGGCCUCUGGAUCGGCGGGAUGAUUAUUCCUUAUCUGU ..(((((((.(((((((.(((.(((..((((((....))))))..)))((((((.(((((...(((..(......)..))).)))))))))))..))).)).)))))...)))))))... ( -50.70) >DroSim_CAF1 21773 120 - 1 AAGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCAGAAAGGUGUCCAGGUGGCCAAAGGCGCUGUCCACUUUCUGCAUGGCCUCUGGAUCGGCGGGCUGUUUGUUCCUUAUCUGU .(((((((((((..(((.(((.(((....((((....))))....)))((((((.(((((...(((..(......)..))).)))))))))))..))).)))...)))..)))))))).. ( -46.00) >DroEre_CAF1 18523 120 - 1 ACGGUGAGGCAGUCGCCAGCCACAUAUUCCUGGUCCUCCAGGAAGGUGUCCAGGUGCCCAAAGGCGGUGUCCACUUUCUGCAUGGCCACUGGAUCGGCCGGCUCUUUACUCCUUAUCUGU ..(((((((.(((.(((.(((.(((.(((((((....))))))).)))(((((..(((...(((.(((....))).)))....)))..)))))..))).))).....))))))))))... ( -49.60) >DroYak_CAF1 27654 120 - 1 ACGGUGAGGCAGUCGCCAGCCACAUAUUCCUGGUCCUCCAGGAAGGUGUCCAGGUGCCCAAAGGCGGUGUCAACUUUCUGCAUGGCCUCUGGAUCAGCAGGCUGUUUGCUCCUUAUCUGU ..(((((((.(((...(((((.....(((((((....)))))))(.((((((((.(((...(((.(((....))).)))....))).)))))).)).).)))))...))))))))))... ( -51.50) >consensus ACGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCAGGAAGGUGUCCAGGUGCCCAAAGGCGCUGUCCACUUUCUGCAUGGCCUCUGGAUCGGCGGGCUGUUUACUCCUUAUCUGU ..(((((((.(((...(((((......((((((....)))))).(.((((((((.(((((...((((.(....)...)))).))))))))))).)).).)))))...))))))))))... (-41.56 = -42.88 + 1.31)
Location | 8,206,138 – 8,206,258 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -49.57 |
Consensus MFE | -40.30 |
Energy contribution | -42.55 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.81 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8206138 120 - 27905053 CUCAAAGGUGGAAACGGAGGCCAACAGGGCAAUGUCGGCAAUGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCAGGAAGGUGUCCAGGUGGCCAAAGGCGCUGUCCACUUUCUG ....((((((((..((..(((((...(((((((((.(((..((((((.....)))))))))))))..((((((....))))))...)))))...))))).....))...))))))))... ( -49.50) >DroSim_CAF1 21813 120 - 1 CUCGAAGGUGGAAACGGAGGCCAAGAGCGCAAUGUCCGCCAAGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCAGAAAGGUGUCCAGGUGGCCAAAGGCGCUGUCCACUUUCUG ...(((((((((...((...))...(((((..((.(((((..(((..(((....))).)))((((....((((....))))....))))...))))).))...))))).))))))))).. ( -48.10) >DroEre_CAF1 18563 120 - 1 CUCGAAGGUGGAAACGGAGGCCAACAGGGCAAUGUCAGCCACGGUGAGGCAGUCGCCAGCCACAUAUUCCUGGUCCUCCAGGAAGGUGUCCAGGUGCCCAAAGGCGGUGUCCACUUUCUG ...(((((((((.(((((.(((.....(((.......)))..(((..(((....))).))).....(((((((....)))))))))).)))...((((....)))))).))))))))).. ( -53.10) >DroYak_CAF1 27694 120 - 1 CUCGAAGGUGGAAACGGAGGCCAACAGGGCAAUGUCAGCCACGGUGAGGCAGUCGCCAGCCACAUAUUCCUGGUCCUCCAGGAAGGUGUCCAGGUGCCCAAAGGCGGUGUCAACUUUCUG ...(((((((....).((.(((..(.(((((.((...(((..(((..(((....))).))).....(((((((....))))))))))...))..)))))...)..))).)).)))))).. ( -47.60) >consensus CUCGAAGGUGGAAACGGAGGCCAACAGGGCAAUGUCAGCCACGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCAGGAAGGUGUCCAGGUGCCCAAAGGCGCUGUCCACUUUCUG ...(((((((((...(((.(((.....(((.......)))..(((..(((....))).)))......((((((....)))))).))).))).((((((....)))))).))))))))).. (-40.30 = -42.55 + 2.25)
Location | 8,206,178 – 8,206,298 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -47.10 |
Consensus MFE | -41.31 |
Energy contribution | -42.12 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.03 |
Mean z-score | -2.23 |
Structure conservation index | 0.88 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.931746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8206178 120 - 27905053 UGGCCACAUUUGGAUACUGGGCUAUAUCGAAGUCCACCACCUCAAAGGUGGAAACGGAGGCCAACAGGGCAAUGUCGGCAAUGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCA ...(((....)))....((((((.......))))))(((((.....)))))....(((((....(((((..((((.(((..((((((.....)))))))))))))..)))))..))))). ( -46.60) >DroSim_CAF1 21853 120 - 1 GGGCCACAUUUGGAUACUGGGCUAUAUCGAAGUCCACCACCUCGAAGGUGGAAACGGAGGCCAAGAGCGCAAUGUCCGCCAAGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCA ((.(((....)))...))(((((.......))))).(((((.....)))))....((((((((.(((.((.......))...(((..(((....))).))).....))).))).))))). ( -42.50) >DroEre_CAF1 18603 120 - 1 UGGCCACGUUUGGGUACUGGGCUAUAUCGAAGUCCACCACCUCGAAGGUGGAAACGGAGGCCAACAGGGCAAUGUCAGCCACGGUGAGGCAGUCGCCAGCCACAUAUUCCUGGUCCUCCA ...((((.(((((((..((((((.......))))))..))).)))).))))....((((((((....(((.......)))..(((..(((....))).))).........))).))))). ( -48.60) >DroYak_CAF1 27734 120 - 1 UGGCCACGUUUGGGUACUGGGCUAUAUCGAAGUCCACUACCUCGAAGGUGGAAACGGAGGCCAACAGGGCAAUGUCAGCCACGGUGAGGCAGUCGCCAGCCACAUAUUCCUGGUCCUCCA ...((((.((((((((.((((((.......)))))).)))).)))).))))....((((((((....(((.......)))..(((..(((....))).))).........))).))))). ( -50.70) >consensus UGGCCACAUUUGGAUACUGGGCUAUAUCGAAGUCCACCACCUCGAAGGUGGAAACGGAGGCCAACAGGGCAAUGUCAGCCACGGUGAGGCAGUCGCCAGCCACAUACUCCUGGUCCUCCA ...((((.(((((((..((((((.......))))))..))).)))).))))....((((((((....(((.......)))..(((..(((....))).))).........))).))))). (-41.31 = -42.12 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:31 2006