Locus 3116

Sequence ID 3R_DroMel_CAF1
Location 8,205,778 – 8,205,898
Length 120
Max. P 0.606511
window5054

overview

Window 4

Location 8,205,778 – 8,205,898
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -37.00
Consensus MFE -32.25
Energy contribution -33.12
Covariance contribution 0.88
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 0.15
SVM RNA-class probability 0.606511
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8205778 120 - 27905053
AUUGAGCUUCACAAACUCCGGCUUCAGUUGCUCCCCGUCCAUGACCUUCAAUAGCUUCAUAUUCAGGUCAACUCCAAGGGCCUUGGCUGUCAUUAUAACGGAGCGGCAAGGAGCCGAGCA
.....(((..........(((((((.((((((((.......((((((..((((......)))).))))))........(((....)))...........))))))))..)))))))))). ( -37.40)
>DroSim_CAF1 21453 120 - 1
AUUGAGCUUCACGAACUCCGGCUUCAGUUGCUCCCCGUCCAUGACCUUCAAUAGCUUCAUAUUCAGGUCAACUCCAAGCGCCUUGGCUGUCAUUAUAACGGAGCGGCAAGGAGCCGAGCA
.....(((..........(((((((.((((((((.......((((((..((((......)))).))))))((.(((((...)))))..)).........))))))))..)))))))))). ( -37.30)
>DroEre_CAF1 18203 120 - 1
AUUGAGCUCCACGAACUCCGGCUUUAAUUGCUCCCCGUCCAUGACCUUCAAUAGCUUCAUAUUCAUUUCAACUCCAAGGGCCUUGGCUGUCAUUAUGACGGAGCGGCAAGGAGCCGAGCA
.....((((...(.....)(((((...(((((.((((((.(((((....((((......))))...............(((....))))))))...))))).).))))).))))))))). ( -33.40)
>DroYak_CAF1 27334 120 - 1
AUUAAGCUUCACGAACUCCGGCUUCAGAUGCUCCCCGUCCAUGACCUUUAAUAGCUUCAUAUUCAGGUCGACUCCAAGGGCCUUGGCUGUCAUCAUGACGGAGCGGCAAGGAGCCGAGCA
.....(((..........(((((((...((((.((((((...(((((..((((......)))).)))))(((.(((((...)))))..))).....))))).).)))).)))))))))). ( -39.90)
>consensus
AUUGAGCUUCACGAACUCCGGCUUCAGUUGCUCCCCGUCCAUGACCUUCAAUAGCUUCAUAUUCAGGUCAACUCCAAGGGCCUUGGCUGUCAUUAUAACGGAGCGGCAAGGAGCCGAGCA
.....(((..........(((((((..(((((.((((((..((((((..((((......)))).))))))((.(((((...)))))..))......))))).).))))))))))))))). (-32.25 = -33.12 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:28 2006