Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,205,393 – 8,205,508 |
Length | 115 |
Max. P | 0.887739 |
Location | 8,205,393 – 8,205,508 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.84 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -18.49 |
Energy contribution | -19.05 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.21 |
Structure conservation index | 0.66 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8205393 115 - 27905053 AAAGUUACGGCUUCCAAUUUGAAAUUACUUCAAAAUGUCAUUUAUUC---UGACUGCAGUAAUUACAAUUUGAUGAUAGGUCAUUAGAACUGCGCGACUGAAAA--GAAUGCCGUGAAAG ....((((((((((...((((((.....))))))..((((.......---)))).(((((........((((((((....)))))))))))))...........--))).)))))))... ( -27.30) >DroSim_CAF1 21089 106 - 1 ---GUUACGGCUUCCAAUUUGAAUUUACUUCAAAAUGUCAUUUAUUCUGCUGACUGCAGUAAUUAGAAUUUGAUGAUAGGUCAUUA-----------CUGAAAAGAGAAUGCCGUGACAG ---((((((((..((..((((((.....)))))).(((((((.(((((((((....))))....)))))..)))))))))......-----------((....)).....)))))))).. ( -30.40) >DroEre_CAF1 17833 115 - 1 AAAGUUACGGCUUCCAAUUUGAAUUUACUUCAAAAUGUCAUUUAUUC---CGUCUGCAGUAAUUACGAAUUGAUGAUAGGUCAUUAGAGCUGUGCGACUGUACA--GAAGGCACUGAAAC ..(((((((((((((..((((((.....)))))).(((((((.((((---.((...........)))))).)))))))))......)))))))..))))...((--(......))).... ( -21.30) >DroYak_CAF1 26954 115 - 1 AAAGUUACGGCUUUCAAUUUGAAUUUACUUCAAAAUGACAACUAUUU---UGACUGCAGUAAUUAGAAAUUGAUGAUAGGUCAUUAUAGCUGUGCGACUGAAAA--GAAGGCCGUGAAAC ....(((((((((((..((((((.....))))))...(((.((((..---(((((.((.((((.....)))).))...)))))..)))).)))...........--)))))))))))... ( -33.10) >consensus AAAGUUACGGCUUCCAAUUUGAAUUUACUUCAAAAUGUCAUUUAUUC___UGACUGCAGUAAUUACAAAUUGAUGAUAGGUCAUUAGAGCUGUGCGACUGAAAA__GAAGGCCGUGAAAC ....((((((((((((.((((((.....)))))).))...................((((..........((((((....))))))..........))))......))).)))))))... (-18.49 = -19.05 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:27 2006