Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,204,792 – 8,204,912 |
Length | 120 |
Max. P | 0.621193 |
Location | 8,204,792 – 8,204,912 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -36.26 |
Consensus MFE | -23.70 |
Energy contribution | -25.07 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.09 |
Mean z-score | -2.24 |
Structure conservation index | 0.65 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8204792 120 - 27905053 UUGAAGGUCCUGCAGGAACUUCUUUCCCUGCUGCAGACUCUCAAGAUUUUGCUCCCAUCCAGGAGUUACUUUUGGGGCAUUCUUAAGCCACCUCUCCACGUUGGGGAACUUGCUUAGGUC ((((..(((..(((((..........)))))....)))..)))).....(((.((((...((......))..)))))))..(((((((....(((((.....)))))....))))))).. ( -38.40) >DroSim_CAF1 20468 120 - 1 UUGAAUGCCCUCCAGGAACUUCUUUCCCUGCUGCAGACUCUCAACAUUUUGCUCCCAUCCAGGAGUUACCUUCGGGGCAUUCUUAAGCCACCUCUCCACGUUGGGGAACUUGCUUAGGUC ..(((((((((..((((((((((.........(((((..........)))))........))))))).)))..)))))))))((((((....(((((.....)))))....))))))... ( -39.83) >DroEre_CAF1 17310 120 - 1 CUUAAUGUCCUCCAGGAACUUCUUCCCCUGCUGCAGACUCUCAAUGUUUUGCUCCCAUCCAGGAGUAACCUUCUGGGCAUUGUUGAACCACCUCUCCACGUUCGGGAACUUGCUGAGGUC ..((((((((...(((...........(((...)))............(((((((......))))))))))...)))))))).......(((((..((.(((....))).))..))))). ( -30.30) >DroYak_CAF1 26330 120 - 1 CUUCAUGUCGUCCAGGAACUUCUUGGCCUGCUUCAGAGUCUCAAUGUUUUGCUCCCAUCCAGGAGUAACCUUCUGGGCAUUGUUAAACCACCUCUCCACGUUCGGGAACUUGGUGAGGUC .........((((((((.......((((((...))).)))........(((((((......)))))))..))))))))...........(((((.(((.(((....))).))).))))). ( -36.50) >consensus CUGAAUGUCCUCCAGGAACUUCUUUCCCUGCUGCAGACUCUCAAUAUUUUGCUCCCAUCCAGGAGUAACCUUCGGGGCAUUCUUAAACCACCUCUCCACGUUCGGGAACUUGCUGAGGUC ..(((((((((..(((...........(((...)))............(((((((......))))))))))..))))))))).......(((((..((.(((....))).))..))))). (-23.70 = -25.07 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:26 2006