Locus 3113

Sequence ID 3R_DroMel_CAF1
Location 8,204,552 – 8,204,672
Length 120
Max. P 0.607008
window5051

overview

Window 1

Location 8,204,552 – 8,204,672
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -41.81
Consensus MFE -34.44
Energy contribution -36.38
Covariance contribution 1.94
Combinations/Pair 1.11
Mean z-score -1.48
Structure conservation index 0.82
SVM decision value 0.15
SVM RNA-class probability 0.607008
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8204552 120 - 27905053
GUUAACCUUGUCCAGAGCUUCCUGAUCUCCGAAUUUGCCAGUGCGGAAGAUUAGGAAGAAGUAUUUGGUCAGGGCGUCGUACAGGGUGCCCAUAUCGAAGUAAAGCCUCUGGUUGAUCAA
(((((((.((.(((((.((((((((((((((.((......)).))).))))))))))).....))))).))((((..(......)..))))...................)))))))... ( -43.40)
>DroSim_CAF1 20228 120 - 1
GUUAGCCUUGUCCAGAGCUUCCUGAUCUCCGAACUUGCCAGUGCGGAAGAUUGGGAAGAAGUACUUGGACAGGGCGUCGUACAGGGUGCCCAUGUCGAAGUAGAGCCUCUGGUUGAUCAG
...........(((((((((((..(((((((.(((....))).))).))))..)))))...(((((.((((((((..(......)..)))).)))).)))))....))))))........ ( -51.50)
>DroEre_CAF1 17070 120 - 1
GUUGACCUUGUCCAGAGCUUCCUGAUCUCCAAAUUGACCAGUGCGGAAGACGGCAAAGAAGUAUUUGGUCAAAGCGUCGUACAGGGUGCCCAUGUCGAAGUACAGCCUCUGGUUGAUCAG
((..((((((.(((((((((((((.((........)).)))(((.(....).)))..))))).))))).))).((.(((.(((((....)).)))))).)).........)))..))... ( -32.70)
>DroYak_CAF1 26090 120 - 1
GUUUACCUUGUCCAGAGCUUCCUGAUCUCCCAGCUUGCCAGUGCGGAAGACAGGGAAGAAGUAUUUGGUCAGGGCUUCGUAGAGGGUGCCCAUGUCGAAGUAGAGCCUCUGGUUGAUCAG
...........((((((((((((((((......(((.((.((.(....))).)).)))........)))))))((((((....((....))....)))))).))).))))))........ ( -39.64)
>consensus
GUUAACCUUGUCCAGAGCUUCCUGAUCUCCGAACUUGCCAGUGCGGAAGACUGGGAAGAAGUAUUUGGUCAGGGCGUCGUACAGGGUGCCCAUGUCGAAGUAGAGCCUCUGGUUGAUCAG
...........((((((((((((((((((((.(((....))).))).)))))))))))...(((((.(.((((((..(......)..)))).)).).)))))....))))))........ (-34.44 = -36.38 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:25 2006