Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,204,272 – 8,204,432 |
Length | 160 |
Max. P | 0.567281 |
Location | 8,204,272 – 8,204,392 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -44.48 |
Consensus MFE | -38.37 |
Energy contribution | -39.50 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.08 |
Mean z-score | -1.48 |
Structure conservation index | 0.86 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8204272 120 - 27905053 AGUUGGUCACCCUCCAUCGUGUUGAUCAACUUGGAGUUCAGCUCCAGACCCAAAGCCUUGGCCACCAUCUGGAUGGCGCGACUGGCCGGCGCCAUGGGGAAAUUGUAGAGAUCCAAGUUC .((((((((.((......).).))))))))(((((.(((.((......((((..((.(((((((((((....))))......))))))).))..))))......)).))).))))).... ( -39.60) >DroSim_CAF1 19948 120 - 1 AGUUGGUCACCCUCCAUCGUGUUGAUCACCUUGGAGUUCAGCUCCAGACCCAAAGCCUUGGCCACCAUCUGGAUGGCGCGACUGGCCGGCGACAUGGGGAAAUUGUACAGAUCCAUGUUU .((((((((..(((((..(((.....)))..))))).((.((((((((......((....)).....))))))..))..)).))))))))((((((((.............)))))))). ( -40.02) >DroEre_CAF1 16790 120 - 1 AAUUGGUCACCCUCCAUAGUAUUGAUCAGCUUGGAGUUCAGCUCCAGUCCCAGAGCCUUGGCCACCAUCUGGAUGGCGCGACUGGCCGGGGCCUUGGGGAAAUUGUAGAGAUCCAAGUUU ...((((((..((....))...))))))(((((((.(((.((.....((((((.((((((((((((((....))))......)))))))))).)))))).....)).))).))))))).. ( -47.70) >DroYak_CAF1 25810 120 - 1 AGUUGGUCACCCUCCAUCGUGUUGAUCAGCUUGGAGUUCAGCUCCAGACCCAGAGCCUUGGCCACCAUCUGGAUGGCGCGACUGGCCGGGGCUAUGGGGAAAUUGUAGAGAUCCAGGCUU ...((((((.((......).).))))))(((((((.(((.((......((((.(((((((((((((((....))))......))))))))))).))))......)).))).))))))).. ( -50.60) >consensus AGUUGGUCACCCUCCAUCGUGUUGAUCAGCUUGGAGUUCAGCUCCAGACCCAAAGCCUUGGCCACCAUCUGGAUGGCGCGACUGGCCGGCGCCAUGGGGAAAUUGUAGAGAUCCAAGUUU ...((((((.............))))))(((((((.(((.((......((((..((((((((((((((....))))......))))))))))..))))......)).))).))))))).. (-38.37 = -39.50 + 1.13)
Location | 8,204,312 – 8,204,432 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.86 |
Mean single sequence MFE | -42.15 |
Consensus MFE | -38.42 |
Energy contribution | -40.68 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.15 |
Mean z-score | -1.45 |
Structure conservation index | 0.91 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8204312 120 + 27905053 CGCGCCAUCCAGAUGGUGGCCAAGGCUUUGGGUCUGGAGCUGAACUCCAAGUUGAUCAACACGAUGGAGGGUGACCAACUGAAGCCAGAGUUCGUGAGGAUUAACCCACAGCACACCAUU .(.((((((.....)))))))...(((.(((((.(((((.....)))))...(((((..(((((....((....))..(((....)))...)))))..)))))))))).)))........ ( -43.70) >DroSim_CAF1 19988 120 + 1 CGCGCCAUCCAGAUGGUGGCCAAGGCUUUGGGUCUGGAGCUGAACUCCAAGGUGAUCAACACGAUGGAGGGUGACCAACUGAAGCCGGAGUUCGUGAAGAUCAACCCACAGCACACCAUU .(.((((((.....)))))))...(((.(((((.(((((.....)))))...(((((..(((((....((....))..(((....)))...)))))..)))))))))).)))........ ( -44.70) >DroEre_CAF1 16830 120 + 1 CGCGCCAUCCAGAUGGUGGCCAAGGCUCUGGGACUGGAGCUGAACUCCAAGCUGAUCAAUACUAUGGAGGGUGACCAAUUGAAGCCGGAUUUCGUGAAGAUCAACCCGCAGCACACCAUU .(.((((((.....)))))))...(((.((((..(((((.....)))))...(((((..(((......((....))....((((.....)))))))..))))).)))).)))........ ( -36.30) >DroYak_CAF1 25850 120 + 1 CGCGCCAUCCAGAUGGUGGCCAAGGCUCUGGGUCUGGAGCUGAACUCCAAGCUGAUCAACACGAUGGAGGGUGACCAACUGAAGCCGGAGUUCGUGAAGAUCAACCCGCAGCACACCAUU .(.((((((.....)))))))...(((.(((((.(((((.....)))))...(((((..(((((....((....))..(((....)))...)))))..)))))))))).)))........ ( -43.90) >consensus CGCGCCAUCCAGAUGGUGGCCAAGGCUCUGGGUCUGGAGCUGAACUCCAAGCUGAUCAACACGAUGGAGGGUGACCAACUGAAGCCGGAGUUCGUGAAGAUCAACCCACAGCACACCAUU .(.((((((.....)))))))...(((.((((..(((((.....)))))...(((((..(((((....((....))..(((....)))...)))))..))))).)))).)))........ (-38.42 = -40.68 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:24 2006