Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,201,881 – 8,202,001 |
Length | 120 |
Max. P | 0.565996 |
Location | 8,201,881 – 8,202,001 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -38.28 |
Consensus MFE | -31.59 |
Energy contribution | -32.78 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.67 |
Structure conservation index | 0.83 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8201881 120 - 27905053 GUCGAAAUCAAAGAUUUCGAAAGUGGAAACGGUGGAGAGGAUGGCAAUAUCAGCCACUGUGAGGUGGUCACCGGCCACGUAGUUCUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA .((((((((...))))))))..((((...(((((.....((((....)))).((((((....))))))))))).))))((..((((((....))))))..))..........((....)) ( -39.00) >DroSim_CAF1 17211 120 - 1 GUCGAAAUCAAAGAUAUCGAAAGUUGAAACGCUGGAGAGGAUGGCAAUAUCGGCCACGGUGAGGUGGUCACCGGCCACGUAGUUCUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA .((((.(((...((((((....((....)).((((((..((((....))))(((((..(..(.(((((.....))))).)..)..)))))))))))...))))))..)))..)))).... ( -38.20) >DroEre_CAF1 16102 120 - 1 GUCGAAAUCAAAGAUAUCGAAAGUGGAAACGCUCGAGAGGAUGGCAAUAUCGGCCACUGUGAGGUGGUCACCGGCCACGUAGUCCUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA .((((.(((...))).))))..(((....)))(((((....((((......(((((((....)))))))....)))).((..((((((....))))))..)).........))))).... ( -40.70) >DroYak_CAF1 23309 120 - 1 AUCGAAAUCAAAGGCGUCGAAAGUGGAAACGCUGGAGAGGAUGGCAAUAUCGGCCACUGUAAGGUGAUCACCGGCCACGUAGUCUUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA .((((.(((...(.((((...((((....))))......)))).)((((((..((.......(((....)))(((((.(....).))))).....))..))))))..)))..)))).... ( -35.20) >consensus GUCGAAAUCAAAGAUAUCGAAAGUGGAAACGCUGGAGAGGAUGGCAAUAUCGGCCACUGUGAGGUGGUCACCGGCCACGUAGUCCUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA .((((.(((...((((((....((....)).((((((..((((....))))(((((..(..(.(((((.....))))).)..)..)))))))))))...))))))..)))..)))).... (-31.59 = -32.78 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:22 2006