Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,199,178 – 8,199,298 |
Length | 120 |
Max. P | 0.516666 |
Location | 8,199,178 – 8,199,298 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -41.80 |
Consensus MFE | -33.99 |
Energy contribution | -34.42 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.49 |
Structure conservation index | 0.81 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8199178 120 - 27905053 AUUGGAGACAUUGGCGAGAAUGGCAAUGUCGGCGACGGUAUACUGGUCCCCAGCCACGUAGUCCUGACCCUCCAGGAAUGUGUUUAGGAAAUCGAAAGUCUCCUGGACCUUUUUGUAGUC ......(((((((.(......).)))))))(((.((((......(((((.....(((((..(((((......))))))))))...((((...(....)..)))))))))...)))).))) ( -37.70) >DroSim_CAF1 14866 120 - 1 AUUGGAGACAUUGGCGAGAAUGGCAAUGUCGGCCACGGUAUACUGGUCCCCAGCCACGUAGUCCUGACCCUCCAGGAAUGUGUUCAGAAAAUCGAAAGUCUCCUGGACCUUUUUGUAGUC .((((.(((((((.(......).)))))))(((((.(.....)))))).))))..((((..(((((......)))))))))((((((.....(....)....))))))............ ( -34.30) >DroEre_CAF1 14538 120 - 1 AUUGGACACAUUGGCGAGAAUGGCAAUGUCGGCCACGGAGUACUGGUCACCAGCCACGUAGUCCUGGCCGUCCAGGAAUGUGUUCAGAAACCCGAAGGUCUCCUGGACCUUCUUGUAGUC .(((((((((((.((.......))...(.((((((.(((.(((((((.....)))).))).))))))))).)....)))))))))))......(((((((.....)))))))........ ( -49.20) >DroYak_CAF1 14583 120 - 1 AUUGGACACAUUGGCGAGAAUGGCAAUGUCGGCCACGGUGUACUGGUCUCCAGCCACGUAGUCCUGGCCAUCCAGGAAUGUGUUCAGAAAAGCGAAGGUGUCCUGCACCUUCUUGUAGUC .((((((((((((((((((.((((.......))))(((....))).))))..)))).....((((((....))))))))))))))))......(((((((.....)))))))........ ( -46.00) >consensus AUUGGACACAUUGGCGAGAAUGGCAAUGUCGGCCACGGUAUACUGGUCCCCAGCCACGUAGUCCUGACCCUCCAGGAAUGUGUUCAGAAAAUCGAAAGUCUCCUGGACCUUCUUGUAGUC .((((((((((..(((....((((..((..(((((.(.....))))))..)))))))))..(((((......)))))))))))))))......(((((((.....)))))))........ (-33.99 = -34.42 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:21 2006