Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,207,466 – 1,207,586 |
Length | 120 |
Max. P | 0.888589 |
Location | 1,207,466 – 1,207,586 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -39.58 |
Consensus MFE | -22.09 |
Energy contribution | -22.48 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.48 |
Mean z-score | -2.26 |
Structure conservation index | 0.56 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1207466 120 - 27905053 GAGAAGAAGGCCGCCGAGGAGGCCAAAAAGAGGGUGAAGCAGAAGAGCAUGCUGAGCUUCCUUCAGAGUGGAAUCGGGGACAAUGGCGACGAGGAGGGCUCCGUGGAGUUCUCUCUCGCU ........((((((((..((..(((....(((((.(.((((........))))...)..)))))....)))..))(....)..)))))..(((((((((((....)))))))).)))))) ( -45.50) >DroVir_CAF1 2701 120 - 1 GAAAAGAAAGCCGCUGAGGAAGCCAAGAAGCGAGUAAAACAAAAAAGCAUGUUAGGCUUCCUACAAAGUGGCAUAGGCGAUAAUGAUGAUGAGGAGGGAUCCAUUGAGUUUUCGUUAGCU .........((((((.((((((((((.(.((...............)).).)).))))))))....))))))...(((..((((((.(((..(((....))).....))).))))))))) ( -35.06) >DroGri_CAF1 3660 120 - 1 GAAAAGAAGGCAGCCGAGGAGAACAAGAAGCGUGUGAAGCAGAAGAGCAUGUUGGGUUUCCUGCAAAGUGGCAUCGGUGACAACGAUGAUGAGGAGGGUUCCAUUGAGUUCUCGCUGGCG ............(((.((((((((....(((((((...........))))))).((..((((.(..(....(((((.......))))).)..).))))..)).....)))))).))))). ( -35.60) >DroSim_CAF1 4174 118 - 1 GAGAAGAAGGCUGCUGAG-AGGCCAACAAGAGGGUGACGCAGAAGAGCAUGCUGAGCUUG-UUCAGAGUGAACUCGCGGACACAGCAGACGAGGAGGGCUCGGUGGAGUUCUCCCUCGCU (((.....(.((((((..-..(((........)))..(((....(((((.((...)).))-))).(((....))))))....)))))).)..(((((((((....))))))))))))... ( -44.60) >DroWil_CAF1 3148 120 - 1 GAAAAGAAGGCUGCCGAGGAAGCUAAGAAGCGUGUGAAACAGAAGAGCAUGUUGAGUUUCUUACAGAGCGGCAUUGGUGAUAAUGGCGAUGAGGAAGGGUCUGUGGAAUUUUCUUUGGCU .........((((((.((((((((....(((((((...........))))))).))))))))...).)))))............(((.(.(((((((..((....)).)))))))).))) ( -31.10) >DroMoj_CAF1 2832 120 - 1 GAAAAGAAGGCCGCCGAGGAAGCCAAAAAGCGAGUGAAGCAGAAGAGCAUGCUGGGCUUCCUGCAGAGUGGCAUUGGCGACAAUGACGAUGAGGAGGGCUCCAUUGAGUUCUCCCUGGCU ........((((((..((((((((....((((.((...........)).)))).))))))))))...((.((((((....))))).).))..(((((((((....)))))))))..)))) ( -45.60) >consensus GAAAAGAAGGCCGCCGAGGAAGCCAAGAAGCGAGUGAAGCAGAAGAGCAUGCUGAGCUUCCUACAGAGUGGCAUCGGCGACAAUGACGAUGAGGAGGGCUCCAUGGAGUUCUCCCUGGCU .........((((((.((((((((....((((.((...........)).)))).))))))))...).)))))....................(((((((((....)))))))))...... (-22.09 = -22.48 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:05 2006