Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,198,183 – 8,198,303 |
Length | 120 |
Max. P | 0.816234 |
Location | 8,198,183 – 8,198,303 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -40.92 |
Consensus MFE | -37.47 |
Energy contribution | -37.85 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.08 |
Mean z-score | -1.69 |
Structure conservation index | 0.92 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8198183 120 - 27905053 UCAUCCCAUCCUGGAGUCACCUUCUUGGCAUUGUCGUACCACCUGGAGACAUUGGAGUACUUGCUGAAGUCGAACUCACUAACUUCGAACGUGGAGACAGUGGACAGGAUGGCAAUGUCC .(((.((((((((......((.....))(((((((...((((.((....))(((((((....(.(((........))))..)))))))..)))).)))))))..))))))))..)))... ( -37.20) >DroSim_CAF1 13875 120 - 1 UCAUCCCAUCCUGGAGUCACCUUCUUGGCAUUUUCGUACCACCUGGAGACAUUGGAGUACUUGCUGAAGUCGAACUCACUGACUUCGAACGUGGAGACAGUGGACAGGAUGGCAAUGUCC .(((.((((((((...((((..((((.((......(((((...((....))...).))))....((((((((.......))))))))...)).))))..)))).))))))))..)))... ( -41.20) >DroEre_CAF1 13549 120 - 1 UCCUCCCAUCCUGGAGUCACCUUUUUGGCAUUGUCGUACCACCUGGACACAUUCGAGUACUUGCUGAAGUCGAAGCCACUCACUUCGAACGUGGAGACAGUGGCCAGGAUGGCAAUGUCC .....(((((((((.....((.....))(((((((...((((.........(((.(((....)))))).((((((.......))))))..)))).))))))).)))))))))........ ( -40.10) >DroYak_CAF1 13611 120 - 1 UCGUCCCAUCCUGGAGUCACCUUCUUGGCAUUGUCGUACCACCUGGUGACAUUUGAGUACUUGCUGAAGUCGAAGCCGCUGACUUCGAACGUGGAGACAGUGGCCAGGAUGGCAAUGUCC .....((((((((...((..((((..((((.....((((((..((....))..)).)))).))))))))..)).(((((((.(((((....))))).)))))))))))))))........ ( -45.20) >consensus UCAUCCCAUCCUGGAGUCACCUUCUUGGCAUUGUCGUACCACCUGGAGACAUUGGAGUACUUGCUGAAGUCGAACCCACUGACUUCGAACGUGGAGACAGUGGACAGGAUGGCAAUGUCC .....((((((((...((..((((..((((.....(((((...((....))...).)))).))))))))..)).(((((((.(((((....))))).)))))))))))))))........ (-37.47 = -37.85 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:17 2006