Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,195,152 – 8,195,270 |
Length | 118 |
Max. P | 0.792727 |
Location | 8,195,152 – 8,195,270 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -30.04 |
Consensus MFE | -23.35 |
Energy contribution | -23.85 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.78 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8195152 118 - 27905053 AUCGUCUCCACACACCCAUGGCCACACAACAGUGUAUUAAUCACGCCGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUG--GGCAAGUCAGAAUAUAAUAGAAGACAAAAA ...((((...........((((.((((....)))).........(((((....))(((((...(((((((.....))))))).)))))--)))..))))............))))..... ( -31.80) >DroSim_CAF1 9404 118 - 1 AUCGUCUCCACACACCCAUGGCCACACAACAGUGUAUUAAUCACGCCGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUA--GGCAAGUCAGAAAAUAAUAAAAGACAAAAA ...((((...........((((.((((....)))).........(((((....)).((((...(((((((.....))))))).)))).--)))..))))............))))..... ( -29.00) >DroEre_CAF1 10659 116 - 1 UACGGCUCCCCACACCCAUGGCCACACAACGGUGUAUUAAUCACGCUGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUA--GGCAAGUCAGAAAAAAAUAAAAGACAAA-- ...((((.....((....))((((((((.((((((.......))))))...............(((((((.....)))))))))))).--))).))))....................-- ( -27.70) >DroYak_CAF1 9204 118 - 1 CACGGCUCCACACACCCAUGGCCACACAGCAGUGUAUUAAUCACUCUGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUAGAGGCAAGUCAGUAAAAAAUAAAAGACAAA-- ...(.(((.(((((....((((.....(((((.((.......)).)))))...))))......(((((((.....)))))))))))).))).)..(((..............)))...-- ( -31.64) >consensus AACGGCUCCACACACCCAUGGCCACACAACAGUGUAUUAAUCACGCCGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUA__GGCAAGUCAGAAAAAAAUAAAAGACAAA__ ...((((...........((((.((((....))))............(((.....(((((....((((((.....)))))))))))....)))..))))............))))..... (-23.35 = -23.85 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:12 2006