Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,194,998 – 8,195,112 |
Length | 114 |
Max. P | 0.859866 |
Location | 8,194,998 – 8,195,112 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 76.45 |
Mean single sequence MFE | -33.43 |
Consensus MFE | -23.02 |
Energy contribution | -23.80 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.04 |
Mean z-score | -1.64 |
Structure conservation index | 0.69 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8194998 114 - 27905053 UCUCUCUGUACCUCUCUCCCCACCUUGCCACGCCCCGCGGGGCGCUUCAAGCUACAACUCUUGUUUGCCGGCAUUGUGGCGACCACAGCCGG-CCCCUAUAAAAGUGGGCUCGCU ................((.((((..((((..((((....))))((..((((........))))...)).))))..)))).))....(((.((-(((((.....)).))))).))) ( -40.50) >DroSim_CAF1 9252 114 - 1 -CUCUCUGUUCCUCUCUCCCCACCCUGCCACGCCCCUCGGGGCGCUUCAAGCUACAACUCUUGUUUGCCGGCAUUGUGGCGACCACAGCCGGACUCCUAUAAAAGUGGGUUCGCU -...............((.((((..((((..((((....))))((..((((........))))...)).))))..)))).))....(((.((((((((.....)).))))))))) ( -35.90) >DroYak_CAF1 9077 90 - 1 UCUAUCUAU-----------------------CCCUC-GGCGCGCUUCAAGCAACAACUCAUGUUUGCCGGCUCUGUGGCGACCGCAGCCGA-CCCCUAUAAAAGUGGGCUCGCU .........-----------------------....(-(((.(((((((((((........)))))).(((((..((((...))))))))).-.........))))).)).)).. ( -23.90) >consensus UCUCUCUGU_CCUCUCUCCCCACC_UGCCACGCCCCCCGGGGCGCUUCAAGCUACAACUCUUGUUUGCCGGCAUUGUGGCGACCACAGCCGG_CCCCUAUAAAAGUGGGCUCGCU ...............................((((....))))((..(((((..........)))))(((((..(((((...))))))))))...(((((....)))))...)). (-23.02 = -23.80 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:11 2006