Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,194,007 – 8,194,127 |
Length | 120 |
Max. P | 0.792404 |
Location | 8,194,007 – 8,194,127 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -51.88 |
Consensus MFE | -46.97 |
Energy contribution | -48.47 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.91 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792404 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8194007 120 + 27905053 GAUUGAUCACGGCGCGCUUCUUGGGGCACUUAGGGUACAGGGAGUCGGUCUUGCCGUACUUCUCCACCAAAUACACCUGGAUGGCGCGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA ....(((.(((((((((((((((((...)))))))....(((((((((.....))...((.(.((((((........))).))).).)))))))))..))))))...)))).)))..... ( -42.50) >DroSim_CAF1 8275 120 + 1 GGUUGAUCACGGCGCGCUUCUUGGGGCACUUGGGGUACAGCGAGUCGGUCUUGCCGUACUUCUCCACCAGGUACACCUGGAUGGCGCGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA (((.(((.((((((((((...(((((..((.(((((((.(((((.....))))).))))))).((((((((....))))).)))...))..).)))).))))))...)))).))).))). ( -55.00) >DroEre_CAF1 9511 120 + 1 GGUUGAUCACGGCGCGCUUCUUGGGGCACUUGGGGUACAGGGAGUCGGUCUUGCCGUACUUCUCCACCAGGUACACCUGGAUGGCUCGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA (((.(((.((((((((((...(((((..((((((.....(((((((((.....))).))))))((((((((....))))).)))))))))..))))).))))))...)))).))).))). ( -56.20) >DroYak_CAF1 8068 120 + 1 GGUUGAUCACGGCGCGCUUCUUGGGGCACUUGGGGUACAGGGAGUCGGUCUUGCCGUACUUCUCCACCAGGUACACCUGGAUGGCACGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA (((.(((.(((((((((((((..((...))..)))....(((((((((.....))...((...((((((((....))))).)))...)))))))))..))))))...)))).))).))). ( -53.80) >consensus GGUUGAUCACGGCGCGCUUCUUGGGGCACUUGGGGUACAGGGAGUCGGUCUUGCCGUACUUCUCCACCAGGUACACCUGGAUGGCGCGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA (((.(((.(((((((((((((..((...))..)))....(((((((((.....))...((.(.((((((((....))))).))).).)))))))))..))))))...)))).))).))). (-46.97 = -48.47 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:10 2006