| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,193,321 – 8,193,422 |
| Length | 101 |
| Max. P | 0.699726 |
| Location | 8,193,321 – 8,193,422 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.46 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -15.32 |
| Energy contribution | -15.66 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8193321 101 - 27905053 CUCGUUAUUUUCUCUUU-GAUGCCAGGGGUGAUUCUCUUUCCUCUUUUGCUAA-----AUCUCUCCGAAUCGAGAGGCAAACAAAAAAAGAUAAUAAAA-------------GAUAGAAU ...((((((((...(((-(.(((((((((.(.....)...)))))........-----.((((........))))))))..))))..))))))))....-------------........ ( -18.50) >DroSim_CAF1 7572 105 - 1 AUUGUUAUUUUCUCUUUCGAUGCCAGGGGUGAUUUGAA--AAGAGUUUGCUAAAUUGAAUCUCUCCGAAUCGAGAGGCAAACAAAAAAAGAAUAUAAAA-------------GCUGGAAU .(((((......(((((((((....((((.((((..(.--...((....))...)..)))).))))..)))))))))..)))))...............-------------........ ( -23.50) >DroEre_CAF1 8829 115 - 1 ---GUUAUUCUCUCUUUCGAUGCAAGGGGUGAUUUGUA--AAGAGUUUGCUAAAACGAAUCUCUCCGAAUCAAGAGACAAGCAAAAAAUGAAUGUAAAAGAAAGAAUAUAGGGCUGGAUU ---..((((((.(((((.(((....((((.(((((((.--...((....))...))))))).))))..))).....(((..((.....))..))).))))).))))))............ ( -25.20) >consensus _U_GUUAUUUUCUCUUUCGAUGCCAGGGGUGAUUUGAA__AAGAGUUUGCUAAA__GAAUCUCUCCGAAUCGAGAGGCAAACAAAAAAAGAAUAUAAAA_____________GCUGGAAU ...(((....((((((..(((....((((.(((((((.................))))))).))))..)))))))))..)))...................................... (-15.32 = -15.66 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:09 2006