Locus 3101

Sequence ID 3R_DroMel_CAF1
Location 8,192,358 – 8,192,478
Length 120
Max. P 0.722162
window5034

overview

Window 4

Location 8,192,358 – 8,192,478
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.89
Mean single sequence MFE -40.85
Consensus MFE -34.86
Energy contribution -35.42
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -1.74
Structure conservation index 0.85
SVM decision value 0.40
SVM RNA-class probability 0.722162
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8192358 120 + 27905053
AUCCUUGGGAUAAAGGGAGCCAUCUUUAUCGUACUUCUCGGCCAGAUAAAUCAGUAUAGCCCUCGACUCCCAGAUGGCGAAACCAUCGUCAACCAGCGUGGGAAUCGUAUGCUGAGGAUU
(((((..(((((((((......))))))))((((.....(((...(((......))).)))...((.((((((((((.....)))))((......)).))))).)))))).)..))))). ( -36.70)
>DroSim_CAF1 6572 120 + 1
AUCCUUGGGAUACAGGGAGCCAUCCUUGUCGUACUUCUCGCCCAGAUAAAUCAGUAUAGCCCUCGACUCCCACAGGGCGAAUCCGUUGUCCACCAGCGUGGGAAUCGUAUGCUGAGGAUU
(((((((((..(((((((....)))))))((.......))))))).....((((((((.....(((.((((((.(((....)))((((.....)))))))))).))))))))))))))). ( -42.30)
>DroEre_CAF1 8118 120 + 1
AUCUUUGGGAUACAGGGAGCCAUCCUUGUCGUACUUCUCGCCCAGAUAAAUCAGUAUAGCCCUCGACUCCCAGAGCGCGAACCCGUCGUCGACGAGCGUGGGAAUCGUAUGCUGAGGAUU
...((((((..(((((((....)))))))((.......))))))))....((((((((.....(((.((((((..(((((........))).))..).))))).)))))))))))..... ( -37.90)
>DroYak_CAF1 6574 120 + 1
AUCCUUGGGAUACAGGGAGCCAUCCUUGUCGUACUUCUCGCCCAGAUAAAUCAGUAUAGCCCUCGACUCCCAGAGGGCGAACCCAUCGUCCACCAGCGUGGGAAUCGUAUGCUGAGGAUU
(((((((((..(((((((....)))))))((.......))))))).....((((((((((((((........))))))...((((.(((......))))))).....)))))))))))). ( -46.50)
>consensus
AUCCUUGGGAUACAGGGAGCCAUCCUUGUCGUACUUCUCGCCCAGAUAAAUCAGUAUAGCCCUCGACUCCCAGAGGGCGAACCCAUCGUCCACCAGCGUGGGAAUCGUAUGCUGAGGAUU
(((((((((..(((((((....)))))))((.......))))))).....((((((((((((((........))))))...((((.(((......))))))).....)))))))))))). (-34.86 = -35.42 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:08 2006