Locus 3100

Sequence ID 3R_DroMel_CAF1
Location 8,191,958 – 8,192,078
Length 120
Max. P 0.747824
window5033

overview

Window 3

Location 8,191,958 – 8,192,078
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -33.65
Consensus MFE -32.01
Energy contribution -32.08
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -1.83
Structure conservation index 0.95
SVM decision value 0.47
SVM RNA-class probability 0.747824
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8191958 120 - 27905053
AAGUGGUUAGGUGGUACGACAAUGCCAAGAAAGUGAUACCCGGCUGGGAGGAGAACUGGGAGGGCUGCGAGUACUACAAGAAAUUGUAUCUGGGUGCGAUUUUGAACAAACAAUGACGGG
..((.(((..(((((((......(((.....(((..(.(((....)))...)..))).....))).....)))))))..((((((((((....))))))))))........))).))... ( -31.80)
>DroSim_CAF1 6172 120 - 1
AAGUGGUCAGGUGGUACGAGAAUGCCAAGAAAGUGAUACCCGGCUGGGAGGAGAACUGGGAGGGCUGCGAGUACUACAAGAAAUUGUAUCUGGGUGCGAUUUUGAACAAACAAUGACGGG
.....((((.(((((((..(...(((.....(((..(.(((....)))...)..))).....)))..)..)))))))..((((((((((....))))))))))..........))))... ( -35.00)
>DroEre_CAF1 7718 120 - 1
AAGUGGUCAGGUGGUACGAGAAUGCCAAGAAAGUGAUACCCGGCUGGGAGGAGAACUGGGAGGGCUGCGAGUACUACAAGAAAUUGUAUCUGGGUGCGAUAUUGAACAAACAAUGACUGG
....(((((.(((((((..(...(((.....(((..(.(((....)))...)..))).....)))..)..))))))).....(((((((....))))))).............))))).. ( -32.70)
>DroYak_CAF1 6174 120 - 1
AAGUGGUCAGGUGGUACGAGAACGCCAAGAAAGUGAUACCCGGCUGGGAGGAGAACUGGGAGGGCUGCGAGUACUACAAGAAAUUGUAUCUGGGUGCGAUUUUGAACAAACAAUGACUGG
....(((((.(((((((..(...(((.....(((..(.(((....)))...)..))).....)))..)..)))))))..((((((((((....))))))))))..........))))).. ( -35.10)
>consensus
AAGUGGUCAGGUGGUACGAGAAUGCCAAGAAAGUGAUACCCGGCUGGGAGGAGAACUGGGAGGGCUGCGAGUACUACAAGAAAUUGUAUCUGGGUGCGAUUUUGAACAAACAAUGACGGG
.....((((.(((((((......(((.....(((..(.(((....)))...)..))).....))).....)))))))..((((((((((....))))))))))..........))))... (-32.01 = -32.08 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:07 2006