Locus 310

Sequence ID 3R_DroMel_CAF1
Location 1,202,948 – 1,203,059
Length 111
Max. P 0.722140
window523

overview

Window 3

Location 1,202,948 – 1,203,059
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 74.86
Mean single sequence MFE -41.38
Consensus MFE -28.38
Energy contribution -28.85
Covariance contribution 0.48
Combinations/Pair 1.36
Mean z-score -1.13
Structure conservation index 0.69
SVM decision value 0.40
SVM RNA-class probability 0.722140
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1202948 111 + 27905053
GGCUGUGUGACGGCGGAAGCGACUGCAUCCUGCAAUCGGGCUCGGCAUCGGGAGCUGCCUCCCAUCCUUCGCUGCGGGAUGACGAGUUUCUGCAGCACAGUUCGCUGUGGG
((((((((....((((((((.....(((((((((..((((...((.((.(((((....))))))))))))).)))))))))....)))))))).))))))))......... ( -47.50)
>DroPse_CAF1 11100 99 + 1
GGCUGUGCGAUGGCGGCAGCGACUGUGUGCUGCAGUCGG------------CUGUCAACUCGAAUCCCUCGCUGCGGGAUCACGAAUUCCUGCAGCACAGCUCGCUUUGGG
((((((.((((((((((..(((((((.....))))))))------------))))))..)))........(((((((((........)))))))))))))))......... ( -46.40)
>DroGri_CAF1 6425 96 + 1
GCCUCUGCGAUGGCGGCCACGAUUGCCUGUUGCAAUCGGA---------------AAGCUCAAAUCCUUCGCUGCGGGACCAGGAGUUCCUACAGCACAGCUCACUGUGGG
(((........)))(((..(((((((.....)))))))..---------------..))).....((...((((..(((.(....).)))..))))((((....)))))). ( -31.20)
>DroYak_CAF1 7157 105 + 1
GGCUGUGUGAUGGGGGAAGCGACUGCAUCUUGCAAUCGGG------AUCGGGAGCAGCCUCCCAUCCUUCGUUGAGGGACCACGAGUUCCUGCAGCACAGCUCCCUGUGGG
((((((((((((((((..((..(((.((((((....))))------)))))..))..)).))))))......((((((((.....)))))).))))))))))(((...))) ( -45.00)
>DroAna_CAF1 14072 99 + 1
GAUUGUGCGAUGGUGGCAGCGACUGCGUUCUGCAGUCU------------GGUGCUUCUUCGAAUCCUUCUUUGCGGGACCAUGAAUUCAUGCAGCACAGCUCGCUGUGGG
((((((((((.((.((((.(((((((.....)))))).------------).)))).))))...((((.......)))).((((....))))..)))))).))........ ( -30.90)
>DroPer_CAF1 11653 99 + 1
GGCUGUGCGAUGGUGGCAGCGACUGUGUGCUGCAGUCGG------------CUGUCAACUCGAAUCCCUCGCUGCGGGAUCACGAAUUCCUGCAGCACAGCUCGCUUUGGG
((((((.(((...(((((((((((((.....)))))).)------------))))))..)))........(((((((((........)))))))))))))))......... ( -47.30)
>consensus
GGCUGUGCGAUGGCGGCAGCGACUGCGUGCUGCAAUCGG____________GUGCAACCUCGAAUCCUUCGCUGCGGGACCACGAAUUCCUGCAGCACAGCUCGCUGUGGG
.......(.((((((((..(((((((.....)))))))................................(((((((((........)))))))))...)).)))))).). (-28.38 = -28.85 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:04 2006