| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 271,077 – 271,177 |
| Length | 100 |
| Max. P | 0.838345 |
| Location | 271,077 – 271,177 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.42 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -17.05 |
| Energy contribution | -17.55 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 271077 100 + 27905053 AUAGUCGACUGGCUGACAUCGGAAGCUAUAAUGUCCAGUUAGCCAACCGGAAAUGCCUAUCUGGAAAUGUAGAG---CAC--AAAA-G----GUAACUUAUAU----------AUCUUCG .....(((.((((((((...(((..........))).))))))))(((.....(((((((.(....).)))).)---)).--....-)----)).........----------....))) ( -22.40) >DroPse_CAF1 6964 100 + 1 AUAGUCGACUGGCUGACAUCGGAAGCUAUAAUGUCCAGUUAGCCAACCGGAAAUGCCUAUCUGCAAAUGUAGAG---CAC--AAAA-U----GACACGUUUAU----------AUCCGUU .........((((((((...(((..........))).))))))))..((((..(((...(((((....))))))---)).--.(((-(----(...)))))..----------.)))).. ( -23.30) >DroGri_CAF1 10248 92 + 1 AUAGUCGACUGGCUGACAUCGGAAGCUAUAAUGUCCUGUUAGCCAACCGGACUGUCCUAUCUGCAAAUGUAGAG---UGUGUAAAAAU----G---------------------UUUUUG (((((((..(((((((((..(((..........))))))))))))..).))))))....(((((....))))).---...........----.---------------------...... ( -24.10) >DroWil_CAF1 20335 117 + 1 AUAGUCGACUGGCUGACAUCGGAAGCUAUAAUGUCCAGUUAGCCAACCGGAAAUGCCUAUCUGCAAAUGUAUAGAGAUAC--AAGA-GAGUGGCAUUUUACAUUACAUAGUCGAUCUUCA ...((((((((((((((...(((..........))).))))))).....((((((((..(((.(...(((((....))))--).))-))..)))))))).........)))))))..... ( -33.60) >DroMoj_CAF1 9104 84 + 1 AUAGUCAACUGGCUGACAUCGGAAGCUAUAAUGUCCUGUUAGCCAACCGGAAACUCCUAUCUGCAAAUGUAGAA---UUU---------------------------------AUUUUUG .(((.....(((((((((..(((..........))))))))))))...(....)..)))(((((....))))).---...---------------------------------....... ( -20.30) >DroPer_CAF1 7105 100 + 1 AUAGUCGACUGGCUGACAUCGGAAGCUAUAAUGUCCAGUUAGCCAACCGGAAAUGCCUAUCUGCAAAUGUAGAG---CAC--AAAA-U----GACACGUUUAU----------AUCCGUU .........((((((((...(((..........))).))))))))..((((..(((...(((((....))))))---)).--.(((-(----(...)))))..----------.)))).. ( -23.30) >consensus AUAGUCGACUGGCUGACAUCGGAAGCUAUAAUGUCCAGUUAGCCAACCGGAAAUGCCUAUCUGCAAAUGUAGAG___CAC__AAAA_U____G__AC_U_UAU__________AUCUUUG ....(((..((((((((...(((..........))).))))))))..))).........(((((....)))))............................................... (-17.05 = -17.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:51 2006