Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,191,138 – 8,191,253 |
Length | 115 |
Max. P | 0.911826 |
Location | 8,191,138 – 8,191,253 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.18 |
Mean single sequence MFE | -41.90 |
Consensus MFE | -41.11 |
Energy contribution | -40.80 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.09 |
Mean z-score | -1.73 |
Structure conservation index | 0.98 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8191138 115 - 27905053 -----UAGACCCGGAUCUGCUCCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGACCAUUAUCAACACCCGAGCUAGGGAGCAAUUCACGCCGGAA -----.....((((...(((((((((..(((((((..((........))..)))..((((((.(....)(((((........))))).))))))))))))))))))).......)))).. ( -42.50) >DroSim_CAF1 5305 115 - 1 -----UAGACCCGGAUCUGCUCCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGACCAUUAUCAACACCCGAGCUGGGGAGCAAUUCACGCCGGAA -----.....((((...(((((((((((...(((((.....)))))....)))..(((((((.(....)(((((........))))).)))))))....)))))))).......)))).. ( -41.90) >DroEre_CAF1 5246 120 - 1 UACUACAGACCCGGAUCUGCUUCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGAUCAUCAUCAACACCCGAGCCGGGGAGCAAUUCAAGCCGGAG ..........((((...(((((((((..(((((((..((........))..)))..((((((.((....(((......)))....)).))))))))))))))))))).......)))).. ( -41.30) >DroYak_CAF1 5317 115 - 1 -----CAGACCCGGAUCUGCUCCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGACCAUUAUCAACACCCGAGCUGGGGAGCAAUUCAAGCCGGAA -----.....((((...(((((((((((...(((((.....)))))....)))..(((((((.(....)(((((........))))).)))))))....)))))))).......)))).. ( -41.90) >consensus _____CAGACCCGGAUCUGCUCCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGACCAUUAUCAACACCCGAGCUGGGGAGCAAUUCAAGCCGGAA ..........((((...(((((((((..(((((((..((........))..)))..((((((.(....)(((((........))))).))))))))))))))))))).......)))).. (-41.11 = -40.80 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:06 2006