Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,185,196 – 8,185,304 |
Length | 108 |
Max. P | 0.948157 |
Location | 8,185,196 – 8,185,304 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 70.72 |
Mean single sequence MFE | -20.33 |
Consensus MFE | -13.00 |
Energy contribution | -13.12 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.18 |
Mean z-score | -1.34 |
Structure conservation index | 0.64 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8185196 108 + 27905053 UGGGUUACAGAUUGCUCUUAAAAUAUAUACAUACAUAGGUGCAAAUUCACGAGUAUCUACUUAAAUCAAAAAUUCUAGCAAGUCGCUAGAAUUCUAC------U-AAUCUACUAA (((((((.((((.((((........(((......))).(((......)))))))))))............(((((((((.....)))))))))....------)-)))))).... ( -19.90) >DroSec_CAF1 7053 95 + 1 UGGGCUACAGAUUGCUCCUAAAAUGUGUAUGUACUUAGGUGCAAAUUCUCGAGUACGUACUCAAAUCAAA--------------------AAGCAGCCGCAAUUAAGAAUACGUA ((((((.......(((.......((.(((((((((..((........))..))))))))).)).......--------------------.))))))).)).............. ( -21.27) >DroSim_CAF1 6953 115 + 1 UGGGCUACAGAUUGCUCCUAAAAUAUGUAUUUACUUAGGUGCAAAUUCUCGAGUACGUACUCAAAUCAUAAAUUCUAGUAAGUCACUUCAAAGCAGCCGCAAUUAAAAAUACGUA ((((((.(...((((.(((((.............))))).))))......((((((.((((..(((.....)))..)))).)).))))....).)))).)).............. ( -19.82) >consensus UGGGCUACAGAUUGCUCCUAAAAUAUGUAUAUACUUAGGUGCAAAUUCUCGAGUACGUACUCAAAUCAAAAAUUCUAG_AAGUC_CU__AAAGCAGCCGCAAUUAAAAAUACGUA ..((((.....((((.(((((.............))))).))))......((((....))))................................))))................. (-13.00 = -13.12 + 0.12)
Location | 8,185,196 – 8,185,304 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 70.72 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -13.94 |
Energy contribution | -15.83 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.04 |
Mean z-score | -2.00 |
Structure conservation index | 0.54 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8185196 108 - 27905053 UUAGUAGAUU-A------GUAGAAUUCUAGCGACUUGCUAGAAUUUUUGAUUUAAGUAGAUACUCGUGAAUUUGCACCUAUGUAUGUAUAUAUUUUAAGAGCAAUCUGUAACCCA ....((((((-.------((.((((((((((.....))))))))))((((..((.(((.((((..(((......)))....)))).))).))..))))..))))))))....... ( -23.70) >DroSec_CAF1 7053 95 - 1 UACGUAUUCUUAAUUGCGGCUGCUU--------------------UUUGAUUUGAGUACGUACUCGAGAAUUUGCACCUAAGUACAUACACAUUUUAGGAGCAAUCUGUAGCCCA ...(((........)))((((((..--------------------.....(((((((....)))))))...((((.((((((...........)))))).))))...)))))).. ( -25.50) >DroSim_CAF1 6953 115 - 1 UACGUAUUUUUAAUUGCGGCUGCUUUGAAGUGACUUACUAGAAUUUAUGAUUUGAGUACGUACUCGAGAAUUUGCACCUAAGUAAAUACAUAUUUUAGGAGCAAUCUGUAGCCCA ...(((........)))((((((...((..((.(((.((((((..((((.(((((((....))))))).((((((......)))))).))))))))))))))).)).)))))).. ( -27.60) >consensus UACGUAUUUUUAAUUGCGGCUGCUUU__AG_GACUU_CUAGAAUUUUUGAUUUGAGUACGUACUCGAGAAUUUGCACCUAAGUAAAUACAUAUUUUAGGAGCAAUCUGUAGCCCA .................((((((...........................(((((((....)))))))...((((.((((((...........)))))).))))...)))))).. (-13.94 = -15.83 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:01 2006