Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,175,128 – 8,175,224 |
Length | 96 |
Max. P | 0.770271 |
Location | 8,175,128 – 8,175,224 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -25.62 |
Energy contribution | -26.43 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.27 |
Mean z-score | -2.12 |
Structure conservation index | 0.79 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8175128 96 - 27905053 AAGAAUAUUGUAUUGCCCGCGAAACCCGAGAGUGUGGCCAUUGUGGCCCACAGUUAUGGUGGCAGUCUUACUCUUGAUUUGGUGGGUAU------AAAAUUC---- ..((((.((((...((((((.(((..((((((((..(((((..((((.....))))..))))).....)))))))).))).))))))))------)).))))---- ( -37.30) >DroSec_CAF1 329 96 - 1 AAGAAUAUAGUGUUGCCCGCGAAACCGGAGAGUGUGGCCAUUGUGGCCCACAGUUAUGGUGGCAGUCUCACUCUUGAUCUGGUGGGUAU------AAGAUUC---- ..((((....(((.((((((.(.....(((((((..(((((..((((.....))))..))))).....)))))))....).))))))))------)..))))---- ( -34.10) >DroSim_CAF1 322 96 - 1 AAGAAUAUAGUGUUGCCCGCGAAACCGGAGAGUGUGGCCAUUGUGGCCCACAGUUAUGGUGGCAGUCUCACUCUUGAUCUGGUGGGUAU------AAGAUUC---- ..((((....(((.((((((.(.....(((((((..(((((..((((.....))))..))))).....)))))))....).))))))))------)..))))---- ( -34.10) >DroEre_CAF1 322 96 - 1 AAGAACAUAGUGUUGCCCGCGAAUCCGGAGAGUGUGGCCAUUGUGGCCCACAGUUACGGUGGUAGUCUCACUCUGGAUCUGGUGGGUAU------AAAAUGC---- .....(((..(((.((((((.(((((((((.(.(..(((((((((((.....)))))))))))...).).)))))))).).))))))))------)..))).---- ( -39.60) >DroYak_CAF1 328 96 - 1 AAGAAUAUAGUGUUGCCCGCGAAACCGGAGAGUGUGGCUAUAGUGGCCCACAGCUACGGUGGCAGUCUCACUCUUGAUCUGGUAAGUAU------GGAAUUC---- ..((((...((((((((..((....))(((((((..(((((.(((((.....))))).))))).....))))))).....))))).)))------...))))---- ( -27.80) >DroAna_CAF1 289 106 - 1 AAGAAUAUAGUGAUACCCUCCAAUCCCGAGAGUGUGGCGAUUGUAGCUCACAGCUAUGGAGGCUUUCUUACAAUGGAUUUGGUAUGUAUUUGAAAAAAAUUGGAAU ..(((((((..((...((((((((((((......))).))))(((((.....))))))))))...))...(((.....)))...)))))))............... ( -22.30) >consensus AAGAAUAUAGUGUUGCCCGCGAAACCGGAGAGUGUGGCCAUUGUGGCCCACAGUUAUGGUGGCAGUCUCACUCUUGAUCUGGUGGGUAU______AAAAUUC____ .............(((((((.(.....(((((((..(((((((((((.....))))))))))).....)))))))....).))))))).................. (-25.62 = -26.43 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:59 2006