Locus 3093

Sequence ID 3R_DroMel_CAF1
Location 8,168,572 – 8,168,674
Length 102
Max. P 0.628704
window5021

overview

Window 1

Location 8,168,572 – 8,168,674
Length 102
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 76.66
Mean single sequence MFE -23.39
Consensus MFE -9.28
Energy contribution -11.08
Covariance contribution 1.81
Combinations/Pair 1.10
Mean z-score -2.21
Structure conservation index 0.40
SVM decision value 0.20
SVM RNA-class probability 0.628704
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8168572 102 - 27905053
UACUUUUGCAUAAUUUCAAUUCACUUCUGGCGACAACAUAUUGCAAAGAAGUUGGCG--UGCUGCGAAAUUCGACGCAGCUAAGUUUGAAUAAAUUCGCAGCUU
.......((.(((((((......(....)((((.......))))...))))))))).--.((((((((((((((.((......))))))))...)))))))).. ( -24.30)
>DroSec_CAF1 61762 79 - 1
AACUUUUGCAUAAUUUCAAUUCACUUCUGGCGACAACAUAUUGCAAAGAAGUU-------GCUGCGAAAUUCGACGCAGCUAAGUU------------------
(((((.................((((((.((((.......))))..)))))).-------((((((........)))))).)))))------------------ ( -18.30)
>DroSim_CAF1 61772 102 - 1
AACUUUUGCAUAAUUUCAAUUCACUUCUGGCGACAACAUAUUGCAAAGAAGUUGGCA--UGCUGCGAAAUUCGACGCAGCUAAAUUUGAAUAAAUUUGCAGCUU
.....(((((.(((((..((((((((((.((((.......))))..)))))).....--.((((((........)))))).......))))))))))))))... ( -24.50)
>DroEre_CAF1 62949 102 - 1
CACUUUUGCAUAAUUUCAAUUUACCACUGGCGGCAACAUAUUGCAAAGAAGUUGCCA--UGCUACGAAAUUCAACGCAGCUAAGUUUGAAUAAAUUUGCAGCAG
..((.(((((.(((((..(((((..((((((((((((.............)))))).--(((.............)))))).))).))))))))))))))).)) ( -20.44)
>DroYak_CAF1 61998 99 - 1
UACUUUUGCAUAAUUUCAAUUCACUACUGGCGGCAACAUAUUGCAAAGAAGUUGCCA--UGCUGCGAAAUUCGAAGCAGCUUAGUUUGAAUAAAUUUGC---AA
.....(((((.(((((..(((((..((((((((((((.............)))))).--((((.((.....)).)))))).)))).)))))))))))))---)) ( -27.92)
>DroPer_CAF1 99898 87 - 1
UAUUUUUGCAUAAUUUCAAUUCGCUGCUGGCGACAACAUAUUGUGUAGAAGUUGGCAAAAGUUGCAGAAUGC-----------------AAAAAUUUGCAACUG
.(((((((((((((......((((.....))))......))))))))))))).......(((((((((.(..-----------------...).))))))))). ( -24.90)
>consensus
UACUUUUGCAUAAUUUCAAUUCACUUCUGGCGACAACAUAUUGCAAAGAAGUUGGCA__UGCUGCGAAAUUCGACGCAGCUAAGUUUGAAUAAAUUUGCAGCUG
......(((.(((((((......(....)((((.......))))...)))))))......((((((........)))))).................))).... ( -9.28 = -11.08 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:55 2006