Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,161,977 – 8,162,075 |
Length | 98 |
Max. P | 0.626167 |
Location | 8,161,977 – 8,162,075 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.94 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -18.09 |
Energy contribution | -18.48 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.30 |
Mean z-score | -2.37 |
Structure conservation index | 0.62 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8161977 98 + 27905053 CGAACCAACUCGAUUCACAACACCAC-GCGACUUGGCUUACCUUUUGUCGC--CGCCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA (((......)))..............-(((((..((....))....)))))--((((((((((.....)).)))))))).......(((.....))).... ( -27.70) >DroSec_CAF1 55455 98 + 1 --UUCCAACUCGAAUCACAACACCAC-GCGACUUGGCUUACCUUUUGUCGCCCCGUCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA --..........((((........((-((((...((....))...((((((((((....((((.....)))))))))))))).)))))).......)))). ( -30.26) >DroSim_CAF1 55053 98 + 1 --UUCCAACUCGAAUCACAACACCAC-GCGACUUGGCUUACCUUUUGUCGCCCCGUCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA --..........((((........((-((((...((....))...((((((((((....((((.....)))))))))))))).)))))).......)))). ( -30.26) >DroEre_CAF1 56663 97 + 1 CGAUCCACCUCGUAUCACACCCAGUC-UUGGCUGGGUUUACCUUUUGUCGC--CGCC-UGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA .........(((((..(((((((((.-...)))))))........((((((--(.((-.((((.....)))).))))))))).....))....)))))... ( -36.00) >DroYak_CAF1 55590 92 + 1 CGAUCCACCUUGAAUCACACCAACUC-UUGGC-----UUACCU-UUGUCGC--CGCCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA .((((.....(((((.((.(((....-.))).-----......-.((((((--(.((..((((.....)))).))))))))).....)).))))).)))). ( -22.10) >DroAna_CAF1 60593 93 + 1 -GUUU---CCCCAACCAUAAC--CACUGAGCCUUGGCUUACCUUUUGUCGC--GGCUCUGGCCAAAAUGGUCUGGGGCGAUAUUUGCGUUAUUUACGAUUA -(((.---((((((((((..(--((..(((((.((((.........)))).--)))))))).....))))).))))).))).....(((.....))).... ( -29.50) >consensus _GAUCCAACUCGAAUCACAACACCAC_GCGACUUGGCUUACCUUUUGUCGC__CGCCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA ...........................(((((..((....))....)))))..((((((((((.....)).)))))))).......(((.....))).... (-18.09 = -18.48 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:54 2006