Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,153,418 – 8,153,513 |
Length | 95 |
Max. P | 0.893683 |
Location | 8,153,418 – 8,153,513 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 79.49 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -17.73 |
Energy contribution | -16.82 |
Covariance contribution | -0.91 |
Combinations/Pair | 1.26 |
Mean z-score | -2.32 |
Structure conservation index | 0.58 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8153418 95 + 27905053 AAAUCCAUUUUUUCCAUUAAAUCGAGUCGCUGAUUGUGCAUGAAGCACUG----CGGGGAGGCGCAAAUGUCAGG--GCUCUUUGGUUAGAUGGGGGCGCC ..........(..(((((.(((((((((.(((((.((((.....))))((----((......))))...))))))--))))...)))).)))))..).... ( -30.70) >DroVir_CAF1 113052 87 + 1 AAAUUCAUUUUUUCCAUUAAAUCGAACCGUUGAUUGUGCAUGAAGCGC---------ACAGGCACAAAUGUCAAC--GCU---CGGUUAGAUGGCACCAGC .............(((((.((((((..((((((((((((.((......---------.)).)))))...))))))--).)---))))).)))))....... ( -25.40) >DroPse_CAF1 80176 101 + 1 AAAUUCAUUUUUUCCAUUAAAUCGAGCCGUUGAUUGUGCAUGAAGCCUCAUCGGGCGGGGGGCACAAAUGUCAGGGGGCUCUUCGGUUAGAUGGGGGCGUU ..........(..(((((.(((((((((.((((((((((.....((((....)))).....)))))...))))).))....))))))).)))))..).... ( -34.30) >DroGri_CAF1 111323 87 + 1 AAAUUCAUUUUUUCCAUUAAAUCGAACCGUUGAUUGUGCAUGAAGCGC---------ACAUGCACAAAUGUCAAC--GUU---CGGUUAGAUGGCAGCAGC .............(((((.((((((((.((((((((((((((......---------.))))))))...))))))--)))---))))).)))))....... ( -32.00) >DroAna_CAF1 43920 87 + 1 AAAUUCAUUUUUUCCAUUAAAUCGAGCCGUUGAUUGUGCAUGAAG---------UGAGGAGGCGCAAAUGUCAGG--GCU--UCGGUUAGAUGG-GGCGCU ...........(((((((.(((((((((.((((((((((......---------.......)))))...))))))--)).--)))))).)))))-)).... ( -26.52) >DroPer_CAF1 81582 101 + 1 AAAUUCAUUUUUUCCAUUAAAUCGAGCCGUUGAUUGUGCAUGAAGCCUCAUCGGGCGGGGGGCACAAAUGUCAGGGGGCUCUUCGGUUAGAUGGGGGCGUU ..........(..(((((.(((((((((.((((((((((.....((((....)))).....)))))...))))).))....))))))).)))))..).... ( -34.30) >consensus AAAUUCAUUUUUUCCAUUAAAUCGAGCCGUUGAUUGUGCAUGAAGCCC________GGGAGGCACAAAUGUCAGG__GCU__UCGGUUAGAUGGGGGCGCC .............(((((.((((((((..((((((((((......................)))))...)))))...)))...))))).)))))....... (-17.73 = -16.82 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:52 2006