Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,195,653 – 1,195,760 |
Length | 107 |
Max. P | 0.818028 |
Location | 1,195,653 – 1,195,760 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 93.46 |
Mean single sequence MFE | -48.02 |
Consensus MFE | -46.12 |
Energy contribution | -45.80 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.18 |
Mean z-score | -1.19 |
Structure conservation index | 0.96 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1195653 107 + 27905053 UCCGCCAUCCGUUCAGGCGGACCACAUCACGUGCAGCCGGGGUCCGCGGGAGCAGCCGCCUGCCCUGGAGACCCGCUGCACCUGUCGCGAGAAGCCCGCCAAGACGG ........(((((..(((((.......((.(((((((..(((((..((((.((((....))))))))..)))))))))))).))((....))...)))))..))))) ( -52.40) >DroSec_CAF1 9726 107 + 1 UCCGCCAUCCGUUCAGGCGGACCACAUCACGUGCAGUCGGGGUCCGCGGGAGCAGCCGCCUGCCCUGGAGACCCGCUGCACCUGUCGCGAGAAGCCCGUCAAGACGG ........(((((..(((((.......((.(((((((..(((((..((((.((((....))))))))..)))))))))))).))((....))...)))))..))))) ( -48.30) >DroSim_CAF1 8829 107 + 1 UCCGCCAUCCGUUCAGGCGGACCACAUCACGUGCAGUCGGGGUCCGCGGGAGCAGCCGCCUGCCCUGGAGACCCGCUGCACCUGUCGCGAGAAGCCCGUCAAGACAG ((((((.........)))))).........(((((((..(((((..((((.((((....))))))))..))))))))))))((((((((.......)))...))))) ( -47.30) >DroEre_CAF1 8890 107 + 1 UCCGCCCUCCGUCCAGGCGGAUCACAUCACGUGCAGCCGGGGUCCGCGGGAGCAGCCGCCUCCCCUAGAGACCCGCUGCACUUGUCGCGAGAAGCCCGCCAAGAUGG ........(((((..(((((.......((.(((((((..((((((..((((((....).)))))...).)))))))))))).))((....))...)))))..))))) ( -48.90) >DroYak_CAF1 9682 107 + 1 UCCGCCCUCCAUCCAGGCGGACCACAUCACGUGCAGCCGGGGUCCGCGGGAACAGCCGCCUGUCCUGGAGACCCGCUGCAACUGUCGCGAGAAGCCCGCCAAAAUGG ........((((...(((((.......((..((((((..(((((..(((((.(((....))))))))..)))))))))))..))((....))...)))))...)))) ( -43.20) >consensus UCCGCCAUCCGUUCAGGCGGACCACAUCACGUGCAGCCGGGGUCCGCGGGAGCAGCCGCCUGCCCUGGAGACCCGCUGCACCUGUCGCGAGAAGCCCGCCAAGACGG ........(((((..(((((.......((.(((((((..(((((..((((.((((....))))))))..)))))))))))).))((....))...)))))..))))) (-46.12 = -45.80 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:03 2006