Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,139,131 – 8,139,225 |
Length | 94 |
Max. P | 0.903481 |
Location | 8,139,131 – 8,139,225 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 95.10 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -26.46 |
Energy contribution | -27.34 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -1.49 |
Structure conservation index | 0.89 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8139131 94 - 27905053 CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCGGCUUAGUUUUGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGGUGCA .(((((.....((.((((.....(((..((....))..)))..)))).)).....(((.(((((((......))))))).))).....))))). ( -32.60) >DroSec_CAF1 32755 94 - 1 CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCUGCUAAGUUUUGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGGUGCA .(((((......((((.....))))(((((.((.((((....)))).))))))).(((.(((((((......))))))).))).....))))). ( -31.30) >DroSim_CAF1 35138 94 - 1 CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCGGCUUAGUUUUGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGGUGCA .(((((.....((.((((.....(((..((....))..)))..)))).)).....(((.(((((((......))))))).))).....))))). ( -32.60) >DroEre_CAF1 32585 93 - 1 CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCGGCUUAGUU-UGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGAUGCA ...((.(((..((.((((.....(((..((....))..)))..)))).))..-..(((.(((((((......))))))).))).....))))). ( -26.30) >DroYak_CAF1 32052 93 - 1 CGCGCCAUCCUUCCAGCGGUCCUUAAAGACAUUUGUAGUUCUCGACUUAGUU-UGGUCUGGGAUUCGUUCUGGGGUUCCCGACAUCUCGGUGCA .((((((((((...(((((((((...((((......((((...)))).....-..)))))))).)))))..)))))....((....))))))). ( -26.32) >consensus CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCGGCUUAGUUUUGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGGUGCA .(((((.....((.((((.....(((..((....))..)))..)))).)).....(((.(((((((......))))))).))).....))))). (-26.46 = -27.34 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:42 2006