Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,137,982 – 8,138,081 |
Length | 99 |
Max. P | 0.575809 |
Location | 8,137,982 – 8,138,081 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.35 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -15.71 |
Energy contribution | -16.46 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.28 |
Mean z-score | -1.88 |
Structure conservation index | 0.52 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8137982 99 - 27905053 UUGUCCAG-CUCAGCGUCUAUUUUCCAGUUAAUUGCGCUGACAGCAUCAAGCUGAGUAU-----UAAACCGAUCUAGGGCUCCUGCAUUUUCAGCCAGGAGUGCA .......(-((((((((..(((........))).)))))))((((.....)))).....-----....((......))((((((((.......).))))))))). ( -27.80) >DroSec_CAF1 31584 99 - 1 UUGUCCAG-CUCAGCGUCGAUUUUCCAGUUAAUUGCGCUGACAGCAUCAAGCUGAGUAU-----UAAACAGAUCUAGGGCUCCUGCAUUUUCAGCCAGGAGUGCA ((((....-.((((((.(((((........)))))))))))((((.....)))).....-----...)))).....(.((((((((.......).))))))).). ( -30.20) >DroSim_CAF1 33970 99 - 1 UUGUCCAG-CUCAGCGUCGAUUUUCCAGUUAAUUGCGCUGACAGCAUCAAGCUGAGUAU-----UAAACAGAUCUAGGGCUCCUGCAUUUUCAGCCAGGAGUGCA ((((....-.((((((.(((((........)))))))))))((((.....)))).....-----...)))).....(.((((((((.......).))))))).). ( -30.20) >DroEre_CAF1 31414 99 - 1 UUGUCCAG-CUCUGCGUCUAUUUUCCAGUUAAUUCUGCUGACAGCAUCAAGCUGGGUAU-----UGAACAGAGCGAGGGCUUCAGAAUUUUGAGCCCGAAGUGCA .((..(.(-(((((..((.....(((((((.....(((.....)))...)))))))...-----.)).))))))..(((((.(((....))))))))...)..)) ( -31.80) >DroYak_CAF1 30898 99 - 1 UUGUCCAG-UUCAGCGUCUAUUUUCCAGUUAAUUGUGCUGACAGCAUCAAGCUGUGUAU-----UGGACAGAGCGAGGGCUCCUGAGUUUUGAGCUAGGAGUGCA ((((((((-(.(((((.(.(((........))).))))))(((((.....)))))..))-----))))))).....(.((((((.(((.....))))))))).). ( -33.90) >DroPer_CAF1 61527 99 - 1 UUUUCAAGACUCCAAGU-GAUGUUUCUGUUAAUGGCAAGGAUAUC-----GCUGAGCAAUAUCAUUGAUAGGUUAAGGGCAGCGGUGUUCUUAGCGAAAAGUGCC (((((..(.(((..(((-((((((..(((.....)))..))))))-----)))))))..............((((((((((....)))))))))))))))..... ( -28.80) >consensus UUGUCCAG_CUCAGCGUCGAUUUUCCAGUUAAUUGCGCUGACAGCAUCAAGCUGAGUAU_____UAAACAGAUCUAGGGCUCCUGCAUUUUCAGCCAGGAGUGCA ..........((((((...................))))))((((.....))))......................(.(((((((..........))))))).). (-15.71 = -16.46 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:41 2006