Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,130,412 – 8,130,513 |
Length | 101 |
Max. P | 0.885491 |
Location | 8,130,412 – 8,130,513 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 88.04 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -22.54 |
Energy contribution | -24.10 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.96 |
Structure conservation index | 0.79 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8130412 101 + 27905053 CCAAACCCAAUCCCCCCCCACACUCAACACUUAUUUGCUCUUGAGUGGUGCUGAUCGGAUGAAGGCAAGUACCGAGUACUUGGCUCUAGGCACAUGAUUGA .......(((((........(((((((..(......)...)))))))(((((....(((....(.(((((((...))))))).)))).)))))..))))). ( -26.80) >DroSec_CAF1 24064 98 + 1 CCAAACCCAAUCCC---CCACACUCCACACUUAUUUGCUCUUGAGUGGUGCUGAUCGGCUGAAGCCGAGUACCGAGUACUUGGCUCUAGGCACAUGAUUGA .......(((((..---.(((((....((((((........))))))))).))...(.(((.((((((((((...)))))))))).))).)....))))). ( -30.00) >DroSim_CAF1 25613 91 + 1 CCAAACCCAAUCCC---CCACACUCAACACUUAUUUGCUCUUGAGUGGUGCUGAUCGGCUGAAA-------CCGAGUACUUGGCUCUAGGCACAUGAUUGA .......(((((..---...(((((((..(......)...)))))))(((((....((......-------))((((.....))))..)))))..))))). ( -23.20) >DroEre_CAF1 23852 93 + 1 -----CCCAAUCCC---UCACACUCGCCACUUAUUUGCUCUUGAGUGGUGCUGAUCGGAUGAAGCCGAGUACUGAGUACUUGGCUCUAGGCACAUGAUUGA -----.((.((((.---(((....(((((((((........))))))))).)))..))))..((((((((((...))))))))))...))........... ( -31.30) >DroYak_CAF1 23265 93 + 1 -----CCCAAUCCC---CCACACUCGGCACUUAUUUGCUCUUGAGUGGUGCUGAUCGCAUGAAGCCGGGUACUGAGUACUUGGCUCUAGGCACAUGAUUGA -----..(((((..---......((((((((.((((......))))))))))))..((.((.((((((((((...)))))))))).)).))....))))). ( -32.20) >consensus CCAAACCCAAUCCC___CCACACUCAACACUUAUUUGCUCUUGAGUGGUGCUGAUCGGAUGAAGCCGAGUACCGAGUACUUGGCUCUAGGCACAUGAUUGA .......(((((...............((((((........))))))(((((..((....))((((((((((...))))))))))...)))))..))))). (-22.54 = -24.10 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:38 2006