Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,126,714 – 8,126,806 |
Length | 92 |
Max. P | 0.605875 |
Location | 8,126,714 – 8,126,806 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.38 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -23.24 |
Energy contribution | -23.27 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -1.06 |
Structure conservation index | 0.78 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8126714 92 + 27905053 UCGAUGUGACACACGAUGUGGCGCCAAUUGACAACAACUUGAUCAUCGGCCGCAGCUGUGGCGGCUGC------------------------AACGCUCAACAUCA---AUUCCGGCGG- ..((((((((((.....)))(((((...((((((....))).)))..))).(((((((...)))))))------------------------...)))).))))).---..........- ( -27.10) >DroVir_CAF1 69297 116 + 1 UCGAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCAGCCGCAGCUGUGGCGGCCGCUGUGGCAGCCAAUCAUAGCAACACUUCGCUCAACAUCA---AUCCCUGCAA- ..((((((((......((((((......((((((....))).)))...))))))(((((((.(((.((....)).)))..)))))))........).)).))))).---..........- ( -33.50) >DroGri_CAF1 84086 111 + 1 UCGAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCAGCCGCAGCUGUGGCGGCCGCUGUGGCAGCCAAUCAUAGCAACACUACGCUCAACAUCA---AUCCC------ ..((((((((......((((((......((((((....))).)))...))))))(((((((.(((.((....)).)))..)))))))........).)).))))).---.....------ ( -33.50) >DroWil_CAF1 45916 95 + 1 UCAAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCGGCCGCAGCUGUGGCGGCUGC------------------------AACGCUCAAUAUCAACAAUCCCAGUAA- ....((((((((.....)))(((((...((((((....))).)))..))).(((((((...)))))))------------------------...))......)).)))..........- ( -22.40) >DroMoj_CAF1 82232 116 + 1 UCGAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCAGCCGCAGCUGUGGCGGCCGCUGUGGCAGCCAAUCAUAGCAGCACUACGCUCAACAUCA---AUCCCUGCAA- ..(((((((..((((.((((((......((((((....))).)))...))))))..))))(((((.(((((((.......))))))).))....))))).))))).---..........- ( -34.60) >DroAna_CAF1 17789 93 + 1 UCGAUGUGACACACGAUGUGGCGCCAAUUGACAACGACUUGAUCAUCGGCCGCAGCUGUGGCGGCUGC------------------------AACGCUCAACAUCA---AUCCCGGCGUA ..((((((((((.....)))(((((...((((((....))).)))..))).(((((((...)))))))------------------------...)))).))))).---........... ( -27.10) >consensus UCGAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCAGCCGCAGCUGUGGCGGCCGC________________________AACGCUCAACAUCA___AUCCCGGCAA_ ..((((((((((.....)))(((((...((((((....))).)))...(((((....)))))))).)).............................)).)))))............... (-23.24 = -23.27 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:37 2006