Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,125,666 – 8,125,769 |
Length | 103 |
Max. P | 0.581374 |
Location | 8,125,666 – 8,125,769 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 93.98 |
Mean single sequence MFE | -32.63 |
Consensus MFE | -27.82 |
Energy contribution | -28.02 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.54 |
Structure conservation index | 0.85 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8125666 103 - 27905053 AUUUUCCAUCUUGUCGGCCGCUAGCCGUGGCAUUUAAUUACAGCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA ...........(((((((.....))).(((((.(((((.....((((((......))(((((((...))))))).))))...))))).)))))))))...... ( -31.90) >DroSec_CAF1 19302 103 - 1 AUUUUCCAUCUUGUCGGCGGCUAGCCGUGGCAUUUAAUUACAGCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA ...........(((((((.....))).(((((.(((((.....((((((......))(((((((...))))))).))))...))))).)))))))))...... ( -33.10) >DroSim_CAF1 20888 103 - 1 AUUUUCCAUCUUGUCGGCGGCUAGCCGUGGCAUUUAAUUACAGCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA ...........(((((((.....))).(((((.(((((.....((((((......))(((((((...))))))).))))...))))).)))))))))...... ( -33.10) >DroEre_CAF1 18878 103 - 1 AUUUUCCAUCUUGUCGGCCGCUAGCCGUGGCAUUUAAUUACAUCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAGA ........(((((.((((.....))))(((((.(((((.((.(((((((......))(((((((...))))))).)))))))))))).))))).....))))) ( -35.30) >DroYak_CAF1 18435 103 - 1 CUUUUCCAUCUUGUCGGCGGCUAGCCGUGGCAUUUAAUUACAACGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA ...........(((((((.....))).(((((.(((((.((..((((((......))(((((((...))))))).)))).))))))).)))))))))...... ( -32.20) >DroAna_CAF1 16716 96 - 1 CUUUUCCAUCAUGU-------UAGCCAUGGCAUUUAAUUACAGCAAUGGUAGAUUGCGCAUACGCAGCGUGUGCCGCGGAGUGUUAAUUGCCAGGCACCAAAA ..............-------..(((.(((((.(((((.((.(((((.....)))))(((((((...)))))))......))))))).))))))))....... ( -30.20) >consensus AUUUUCCAUCUUGUCGGCGGCUAGCCGUGGCAUUUAAUUACAGCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA .......................(((.(((((.(((((.((.(((((.....)))))(((((((...)))))))......))))))).))))))))....... (-27.82 = -28.02 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:36 2006