Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,188,789 – 1,188,945 |
Length | 156 |
Max. P | 0.644650 |
Location | 1,188,789 – 1,188,905 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.18 |
Mean single sequence MFE | -23.42 |
Consensus MFE | -17.56 |
Energy contribution | -17.38 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.21 |
Mean z-score | -1.41 |
Structure conservation index | 0.75 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1188789 116 + 27905053 AGUUAUAAAAUACUUCUUAAAGU----ACUCAACAACUGCAGUGUGUAUCAUAGCGCACUUAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCAC .((..((((.(((((....))))----)...(((..(((.(((((((......)))))))))).(((((((.....)))))))............)))............))))..)).. ( -25.40) >DroSec_CAF1 4776 116 + 1 AGUUAUAAAAUACUUCUUAAAGU----ACUCAACAACUGCAGUGUGAAUCAUGGCGCACUCAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCAC .((..((((.(((((....))))----)...(((..(((.((((((........))))))))).(((((((.....)))))))............)))............))))..)).. ( -25.70) >DroSim_CAF1 3717 116 + 1 GGUUAUAAAAUACUUCUUAAAGU----ACUCAACAACUGCAGUGUGAAUCAUGGCGCACUUGGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCAC ((((......(((((....))))----)......))))((...((((((...(((.......)))((((((.....)))))).......))))))........((((.....)))))).. ( -24.00) >DroEre_CAF1 3599 109 + 1 AGCUAUAAAAUACUACUUAAAGUAUGUACUUAAAAGUUCCAGUGUGAAUCAUAGCACACUUAGUCAGAACCAAACAGGUUCCGAUUUAUAUUCCUGUUCCGAUCGUAAA----------- .(((((...(((((((((.((((....))))..))))...))))).....)))))......((((.(((((.....))))).)))).......................----------- ( -18.60) >consensus AGUUAUAAAAUACUUCUUAAAGU____ACUCAACAACUGCAGUGUGAAUCAUAGCGCACUUAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCAC ..........(((.......................(((.((((((........))))))))).(((((((.....))))))).....................)))............. (-17.56 = -17.38 + -0.19)
Location | 1,188,825 – 1,188,945 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -18.20 |
Energy contribution | -17.83 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.08 |
Mean z-score | -1.68 |
Structure conservation index | 0.69 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1188825 120 + 27905053 AGUGUGUAUCAUAGCGCACUUAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCACCUCAUUUACUAACAAUGUACAAUUGCUUUGAACUUGGCCA (((((((......)))))))..(((((((((.....)))))).............((((.(.(((((.....))))))..............((((.....))))....))))..))).. ( -26.70) >DroSec_CAF1 4812 120 + 1 AGUGUGAAUCAUGGCGCACUCAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCACCUCAUUUACUAACAAUGAACAAUUGCUUUGAACUUGGCCA ...((((((...(((.......)))((((((.....)))))).......))))))((((....((((.....))))(((..(((((.......))))).....)))...))))....... ( -25.50) >DroSim_CAF1 3753 120 + 1 AGUGUGAAUCAUGGCGCACUUGGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCACCUCAUUUACUAACAAUGAACAAUUGCUUUGAACUUGGCCA ((((((........))))))(((((((((((.....)))))).............((((....((((.....))))(((..(((((.......))))).....)))...))))..))))) ( -29.60) >DroEre_CAF1 3639 90 + 1 AGUGUGAAUCAUAGCACACUUAGUCAGAACCAAACAGGUUCCGAUUUAUAUUCCUGUUCCGAUCGUAAA------------------------------CGAUUGCUUUGAACUUGGCCA ((((((........)))))).((((.(((((.....))))).))))......((.((((((((((....------------------------------))))))....))))..))... ( -23.90) >consensus AGUGUGAAUCAUAGCGCACUUAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCACCUCAUUUACUAACAAUGAACAAUUGCUUUGAACUUGGCCA ((((((........))))))..(((((((((.....)))))..............((((.((..((((..................................)))))).)))).)))).. (-18.20 = -17.83 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:02 2006