| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,120,252 – 8,120,358 |
| Length | 106 |
| Max. P | 0.644134 |
| Location | 8,120,252 – 8,120,358 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.20 |
| Mean single sequence MFE | -38.47 |
| Consensus MFE | -25.95 |
| Energy contribution | -24.87 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8120252 106 + 27905053 CCUCAAGGCGAUCGUGCUCUUCACCACCGGUAAGUUGCUGGACAUUCUGUACAAGGAUGUGCCGGCACUGCUCACCAAGGUUUCAGCACUGCUU---GGCAAGGGUUCC----------- (((..(((((...(((((....(((...(((.((((((((((((((((.....))))))).))))))..))).)))..)))...))))))))))---....))).....----------- ( -37.70) >DroVir_CAF1 57248 117 + 1 CCUCAAGGCAAUUGUGCUUUUCACCACCGGUAAGUUGCUGGAUAUCCUGUACAAGGAUGUGCCCGCACUGCUAACCAAAGUUUCAGCACUGCUG---GGCAAACGUGUGCCGGCAGCGUU ....((((((....))))))..(((...)))..(((((((((((((((.....)))))))(((((((.(((((((....)))..)))).))).)---))).........))))))))... ( -42.10) >DroGri_CAF1 75603 117 + 1 CCUCAAGGCAAUUGUGCUGUUUACCACCGGUAAGUUGCUGGACAUCCUCUACAAGGAUGUGCCCGCACUGCUAACCAAAGUUUCAGCGCUUCUC---GGCAAGCGUGUGGCAUCUGGCGC .............((((((..(.((((.(((.((((((.(((((((((.....))))))).)).)))..))).))).........((((((...---...)))))))))).)..)))))) ( -38.30) >DroWil_CAF1 38144 115 + 1 CCUCAAGGCAAUUGUACUCUUCACCACCGGUAAGUUGCUGGACAUUCUGUACAAGGAUGUGCCCGCCUUGCUAACAAAGGUGUCGACACUGCUUCUGGGCAAGGAUGCGCC-UCUG---- .....((((.................(((((.....)))))(((((((.....)))))))((...(((((((......((((....)))).......)))))))..)))))-)...---- ( -36.22) >DroMoj_CAF1 74037 106 + 1 CCUCAAGGCCAUUGUGCUCUUCACCACCGGUAAGUUGCUGGACAUCCUGUACAAGGAUGUGCCCGCACUGCUAACCAAAGUUUCAGCACUGCUC---GGCAGGCGUGUG----------- .......(((................(((((.....)))))(((((((.....)))))))(((.(((.(((((((....)))..)))).)))..---))).))).....----------- ( -33.30) >DroAna_CAF1 11878 106 + 1 CCUCAAGGCCAUCGUGCUGUUUACCACCGGUAAGUUGCUGGACAUCCUGUACAAGGAUGUGCCGGCGCUGCUCGCCAAGGUUUCAGGGCUGCUG---GUUAAGAGCUUA----------- .(((..(((((.(((.(((...(((...((..((((((((((((((((.....))))))).))))))..)))..))..)))..))).)).).))---)))..)))....----------- ( -43.20) >consensus CCUCAAGGCAAUUGUGCUCUUCACCACCGGUAAGUUGCUGGACAUCCUGUACAAGGAUGUGCCCGCACUGCUAACCAAAGUUUCAGCACUGCUC___GGCAAGCGUGUG___________ ......(((.................(((((.....)))))(((((((.....))))))))))(((((((((......(((......))).......))))...)))))........... (-25.95 = -24.87 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:32 2006