Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,116,007 – 8,116,122 |
Length | 115 |
Max. P | 0.555041 |
Location | 8,116,007 – 8,116,122 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 74.51 |
Mean single sequence MFE | -20.45 |
Consensus MFE | -17.28 |
Energy contribution | -17.00 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -0.46 |
Structure conservation index | 0.84 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8116007 115 + 27905053 GAUCAACACCAUCGCAAUCAAUGUCAAUAUUGUCGAUUGAAGAAGUGCCUCAAAAUGGGCAUGAGACGCGAAGGUAAGCAUCAUCAACAUGAUCAUCAUCUCACCAUCAACAUUC (((((..(((.((((..((((((.((....)).).)))))....((((((......)))))).....)))).)))..(......)....)))))..................... ( -23.50) >DroVir_CAF1 50552 88 + 1 GAUCAACAUCAUCGCAAUCAAUGCCAAUAUUGCCGUUUGAAAAAGUGCCUCAAAAUGGGCAUGCGACGCGAAGGUAAGUCCUC-----CCA-CC--------------------- .......(((.((((..((((.((.......))...))))....((((((......)))))).....)))).)))........-----...-..--------------------- ( -16.90) >DroGri_CAF1 69341 106 + 1 GAUCAACAUCAUCGCAAUCAAUGCCAAUAUUGCCGUUUGAAAAAGUGCCUCAAGAUGGGCAUGCGACGCGAAGGUAAGUCUCUUGUCCCCA-CCGAU--U------UCCCCGUUG ...((((....((((..((((.((.......))...))))....((((((......)))))).....)))).((.(((((...........-..)))--)------).)).)))) ( -21.02) >DroWil_CAF1 32995 98 + 1 GAUCAACAUCAUCGCAAUCAAUGCCAAUAUUGCCGCUUGAAAAAGUGCCUCAAAAUGGGCAUGAGACGUGAAGGUAAGUUUCAU-AUCAAUUUAAUU--UU-------------- ((.....(((.((((..(((.((((.((.(((.(((((....)))))...))).)).)))))))...)))).))).....))..-............--..-------------- ( -20.50) >DroYak_CAF1 8757 98 + 1 GAUCAGCAUCAUCGCAAUCAAUGUCAAUAUUGCCGAUUGAAGAAGUGCCUCAAAAUGGGCAUGAGACGCGAAGGUAAGCAUCAUCAUCA-----------------UCACCAUUC (((..(((((.((((..((....(((((.......)))))....((((((......))))))))...)))).)))..))...)))....-----------------......... ( -19.00) >DroMoj_CAF1 67670 88 + 1 GAUCAGCAUCAUCGCAAUCAAUGCCAAUAUUGCCGCUUGAAAAAGUGCCUCAAAAUGGGCAUGCGACGCGAAGGUAAGUCCAU-----CCU-AU--------------------- (((..(((((.((((..((.(((((.((.(((.(((((....)))))...))).)).)))))..)).)))).)))..))..))-----)..-..--------------------- ( -21.80) >consensus GAUCAACAUCAUCGCAAUCAAUGCCAAUAUUGCCGAUUGAAAAAGUGCCUCAAAAUGGGCAUGAGACGCGAAGGUAAGUCUCAU_A_CACA_CC_____________________ .......(((.((((..((((((.((....)).)).))))....((((((......)))))).....)))).)))........................................ (-17.28 = -17.00 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:31 2006