Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,111,596 – 8,111,703 |
Length | 107 |
Max. P | 0.500000 |
Location | 8,111,596 – 8,111,703 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 81.29 |
Mean single sequence MFE | -24.84 |
Consensus MFE | -19.54 |
Energy contribution | -19.10 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.34 |
Structure conservation index | 0.79 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8111596 107 + 27905053 UUUUCGUAUUUUUUAUAUAUAUUUUGUGUUUUUUUGAUUUUGUGGUGAGUGGGCGUGGUCAAAACGCCCGCAGCAGCAAAUUUCUUAUUUAUUAAUUAGCAGGAGGC .....................((((.((((...((((((((((.((..((((((((.......)))))))).)).)))))..........)))))..)))).)))). ( -24.40) >DroEre_CAF1 4841 96 + 1 UUUUCAUAUUUUUUGUAU-----------UUUUUGUAUUUUUUGGGGAGUGGGCGUGGUCCAAACGCCCGCAGCAGCAGAUUUCUUAUUUAUUAAUUAGCAAGAGGC ........((((((((..-----------.....(((.....((((((((((((((.......))))))((....))..))))))))..)))......)))))))). ( -21.32) >DroYak_CAF1 4329 95 + 1 UUCUCGUAUUUUUUGCAC-----------UU-UUGUGGGGAGUGGGGAGUGGGCGUGGUCAAAACGCCCGCAGCAGCAAAUUUCUUAUUUAUUAAUUAGCAAGAGGC ..............((.(-----------((-((((...(((((((((((((((((.......))))))((....))..)))))))))))........))))))))) ( -28.80) >consensus UUUUCGUAUUUUUUGUAU___________UUUUUGUAUUUUGUGGGGAGUGGGCGUGGUCAAAACGCCCGCAGCAGCAAAUUUCUUAUUUAUUAAUUAGCAAGAGGC .((((...........................................((((((((.......))))))))....((.((((...........)))).))..)))). (-19.54 = -19.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:30 2006