Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,107,889 – 8,107,988 |
Length | 99 |
Max. P | 0.500000 |
Location | 8,107,889 – 8,107,988 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.53 |
Mean single sequence MFE | -30.32 |
Consensus MFE | -21.51 |
Energy contribution | -21.07 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.22 |
Mean z-score | -0.89 |
Structure conservation index | 0.71 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8107889 99 + 27905053 AUCGACAGCAAGCAGAACAUCGAGUGCGUCGUCUGCGGCGACAAGAGUUCCGGCAAGCACUACGGACAAUUUACCUGCGAAGGUGAGUACACUG---CGAG------------A------ ...........((((....(((((((((((((.....)))))....((....))..))))).)))...((((((((....))))))))...)))---)...------------.------ ( -31.90) >DroVir_CAF1 37572 116 + 1 AUUGACUCCAAACAGAACAUCGAGUGCGUCGUCUGCGGCGACAAGAGUUCCGGCAAGCACUACGGACAAUUUACGUGUGAAGGUGAGUACAGCA----GAGGGGUUGUGCAAGGAGGAGU ....(((((........((((.((((((((((.....)))))....((....))..))))).((.((.......)).))..)))).(((((((.----.....))))))).....))))) ( -35.80) >DroGri_CAF1 57947 112 + 1 AUCGAUUCCAAACAGAGCAUCGAGUGCGUCGUCUGCGGCGACAAGAGCUCCGGCAAACACUACGGUCAAUUUACCUGUGAAGGUGAGUAACACACAAAAAGGGAGUAAGCAA-------- .(((((.(........).))))).((((((((.....)))))....((((((((..........))).((((((((....)))))))).............)))))..))).-------- ( -31.10) >DroWil_CAF1 24135 91 + 1 AUCGAUUCCAAACAGAAUAUCGAGUGUGUUGUUUGCGGCGACAAGAGUUCCGGCAAACAUUACGGACAGUUUACCUGUGAAGGUGAGUAAU----------------------------- .(((((((......))..)))))((.((((((((((.(.(((....))).).)))))))..))).))..(((((((....)))))))....----------------------------- ( -25.30) >DroMoj_CAF1 56793 102 + 1 AUCGACUCCAAACAGAACAUCGAGUGCGUCGUCUGCGGCGACAAGAGCUCCGGCAAGCACUACGGACAAUUUACCUGUGAAGGUGAGUACCCCA----GCCGGGCC-------------- .((((.((......))...))))((.(((((....)))))))....((.(((((.....(....)...((((((((....))))))))......----))))))).-------------- ( -31.90) >DroAna_CAF1 589 92 + 1 AUCGACAGCAAGCAGAACAUCGAGUGCGUGGUGUGCGGCGACAAGAGCUCCGGCAAGCACUACGGCCAGUUUACCUGCGAAGGUGAGUCAA---------G------------------- ...(((.(((..(........)..)))(((((((.(((.(.(....)).)))....))))))).......((((((....)))))))))..---------.------------------- ( -25.90) >consensus AUCGACUCCAAACAGAACAUCGAGUGCGUCGUCUGCGGCGACAAGAGCUCCGGCAAGCACUACGGACAAUUUACCUGUGAAGGUGAGUAAA_CA____GAG___________________ ...................(((((((((((((.....)))))....((....))..))))).)))...((((((((....))))))))................................ (-21.51 = -21.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:27 2006