Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,105,063 – 8,105,161 |
Length | 98 |
Max. P | 0.946407 |
Location | 8,105,063 – 8,105,161 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.49 |
Mean single sequence MFE | -48.02 |
Consensus MFE | -29.65 |
Energy contribution | -31.05 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.11 |
Mean z-score | -2.12 |
Structure conservation index | 0.62 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8105063 98 - 27905053 CCAAAUUGUGGCCACCGCACUUUGCACUUCCCCGCCCA------C-CUCUUGCCAAC--GAAAUG------------UAUGAGUG-GAGUGGGUGGGCGCAGGGCGUAACGGGCCACGGA .....((((((((...((.((((((.((..((((((((------(-.((.(((....--.....)------------)).)))))-).)))))..)).)))))).))....)))))))). ( -44.60) >DroSec_CAF1 56800 105 - 1 CCAAAUUGUGGCCACCGCACUUUGCACUUCACCGCCCCCUCACCC-CUCUUGACAAA--GAAAUG------------UGUGAUUGGGAGUGGGUGGGCGCAAGGCGUAACGGGCCACGGA .....((((((((...((.((((((........((((.(((((((-(...(.(((.(--....).------------))).)..))).))))).)))))))))).))....)))))))). ( -44.20) >DroSim_CAF1 28891 106 - 1 CCAAAUUGUGGCCACCGCACUUUGCACUUCCCCCGCCCCUCACCCUCUCUUGCCAAA--GAAAUG------------UGUGAUUGGGAGUGGGUGGGCGCAGGGCGUAACGGGCCACGGA .....((((((((...((.((((((...(((((((((((((((.(..((((....))--))...)------------.))))..))).))))).))).)))))).))....)))))))). ( -45.40) >DroEre_CAF1 31772 103 - 1 CCAAAUUGUGGCCACCGCACUUUGCACUCCCCCGCCCC--------CUUUUGGCCCU--GAGCUGGG----AGUGGGAGUGGAUGGGCGCAG---GGCGCAGGGCGUAACGGGCCACGGA .....((((((((.((((.((((((.(((..(((((((--------((((..((...--..))..))----)).))).))))..))).))))---)).)).)).((...)))))))))). ( -50.20) >DroYak_CAF1 25279 111 - 1 CCAAAUUGUGGCCACCGCACUUUGCACUCCCCCGCCCC--------CUUUUGUCCCGGUGAG-UGGGCGCUGGUGGGCGUGGGUGGGCGUAGGUGGGCGCAGGGCGUAACGGGCCACGGA .....((((((((.((((.((.(((.(..(((((((((--------(...((((((.....)-.)))))..)).))))).)))..)))).))))))((((...))))....)))))))). ( -55.70) >consensus CCAAAUUGUGGCCACCGCACUUUGCACUUCCCCGCCCC______C_CUCUUGCCAAA__GAAAUG____________UGUGAGUGGGAGUGGGUGGGCGCAGGGCGUAACGGGCCACGGA .....((((((((...((.((((((.(((.((((((((..............................................))).))))).))).)))))).))....)))))))). (-29.65 = -31.05 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:26 2006