Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,104,644 – 8,104,754 |
Length | 110 |
Max. P | 0.528521 |
Location | 8,104,644 – 8,104,754 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.40 |
Mean single sequence MFE | -32.24 |
Consensus MFE | -23.98 |
Energy contribution | -24.02 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.56 |
Structure conservation index | 0.74 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8104644 110 + 27905053 AAACGGGGCUGCCAGAGAGAGACAUCUAGCGGUGUUAAUAAAAACCCAGCCAGCCAAAUGCUUUUUGU-UCCU--UUUCGGCCGCCUUUA------UGGGGCAGAAA-AAAGGCAAACGA ...((.(((((.(.(..(((....)))..)((.(((......))))).).)))))........(((((-(..(--((((.(((.((....------.))))).))))-)..)))))))). ( -31.40) >DroSec_CAF1 56389 111 + 1 AAACGGGGCUGCCAGAGAGAGACAUCUAGCGGUGUUAAUAAAAAGCCAGCCAGCCAAAUGCUUUUUGU-UCCU--UUUCAGCCGCCUUUA------UGGGGCAGAAAAAAAGGCAAACGA ...((.(((((.(.(..(((....)))..)(((...........))).).)))))...((((((((..-....--((((.(((.((....------.))))).))))))))))))..)). ( -30.00) >DroSim_CAF1 28466 111 + 1 AAACGGGGCUGCCAGAGAGAGACAUCUAGCGGUGUUAAUAAAAAGCCAGCCAGCCAAAUGCUUUUUGU-UCCC--UUUCGGCCGCCUUUA------UGGGGCAGAAAAAAAGGCAAACGA ......(..((((.(((((.((((((....))))))((((((((((.............)))))))))-)..)--)))).(((.((....------.))))).........))))..).. ( -31.52) >DroEre_CAF1 31345 109 + 1 AAACGGGGCUGCCAGAGAGAGACAUCUAGCGGUGUUAAUAAAAAGC----CAGCCAAAUGCCUUUUUUCCCUUCCUUUCAGCCGACUUUG------UGGGGCAGAAA-AAAGGCAAUCGA ...(((((((((.....(..((((((....))))))..).....).----)))))...(((((((((((..((((...(((......)))------.))))..))))-))))))).))). ( -32.70) >DroYak_CAF1 24866 113 + 1 AAACGGGGCUGCCAGAGAGAGACAUCUAGCGGUGUUAAUAAAAAGC----CAGCCAAAUGCUUUUUUCUUCUU--UUUCAGCCGCCUUUGCCUUUAUGGGGCAGAAA-AAAGGCAAACGA ...((.(((((..(((((((((((((....))))))...(((((((----.........))))))))).))))--)..)))))((((((((((.....)))))....-.)))))...)). ( -35.60) >consensus AAACGGGGCUGCCAGAGAGAGACAUCUAGCGGUGUUAAUAAAAAGCCAGCCAGCCAAAUGCUUUUUGU_UCCU__UUUCAGCCGCCUUUA______UGGGGCAGAAA_AAAGGCAAACGA ...((.(((((.(.....).((((((....))))))..............)))))...(((((((..........((((.(((.((...........))))).)))).)))))))..)). (-23.98 = -24.02 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:25 2006