Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,104,115 – 8,104,228 |
Length | 113 |
Max. P | 0.626421 |
Location | 8,104,115 – 8,104,228 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 90.71 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -18.86 |
Energy contribution | -19.05 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.91 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8104115 113 + 27905053 UCUGGCCAACAGUAGUUGCACGUACAGCUUUUUCCGCCCAGCUGGGUCCACUUUCCACUUUUUACUCCCCACUUUUCCCCCGAGGACCAUCCUCUUUCAAUGAACUGUCCAAA ..(((...(((((.((((...((((((((..........)))))((........))......)))................((((.....))))...))))..)))))))).. ( -20.90) >DroSec_CAF1 55877 113 + 1 UCUGGCCAACAGUAGUUCCACGUACAGCUUUUUCCGCCCAGCUGGGCCCACUUUCCACUUUCCACUCCCCACCUUUCCCCCGAGGACCACCCUCUUUCAAUGAACUGUCCAAA .(((.....)))((((((.................((((....))))..................................((((.....)))).......))))))...... ( -19.30) >DroSim_CAF1 27941 113 + 1 UCUGGCCAACAGUAGUUGCACGUACAGCUUUUUCCGCCCAGCUGGGCCCACUUUCCACUUUCCACUCCCCACCUUUCCCCCGAGGACCACCCUCUUUCAAUGAACUGUCCAAA ..(((...((((((((((......)))))......((((....))))..................................((((.....)))).........)))))))).. ( -21.50) >DroYak_CAF1 24330 105 + 1 UCUGGCCAACUGUAGUUGCACGUACAGCUUUUUCCGCCCAGCUGGGCCCACUUUCCACUCCCCA--------CUCUCCCCCGGGGACCACCCCCUUUCAAUGAACUGUCCCAA ..(((.((((....)))).....((((........((((....))))...........(((((.--------.........)))))..................)))).))). ( -21.10) >consensus UCUGGCCAACAGUAGUUGCACGUACAGCUUUUUCCGCCCAGCUGGGCCCACUUUCCACUUUCCACUCCCCACCUUUCCCCCGAGGACCACCCUCUUUCAAUGAACUGUCCAAA ..(((...((((((((((......)))))......((((....))))..................................((((.....)))).........)))))))).. (-18.86 = -19.05 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:21 2006