Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,188,504 – 1,188,596 |
Length | 92 |
Max. P | 0.992205 |
Location | 1,188,504 – 1,188,596 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.30 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -6.98 |
Energy contribution | -8.46 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.30 |
Mean z-score | -1.88 |
Structure conservation index | 0.31 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1188504 92 + 27905053 ---------------AUAAUUGGACAUGUUCAGAAA----U-UAUUGCUAUACAUUU---UAUACGUAUGUACAUUGCGCGAUUCGUGUUCAUAGCUCGCUGAACUGAGCAACCA----- ---------------.....(((...(((((((...----.-....(((((((((..---....((((.......))))......))))..)))))........))))))).)))----- ( -18.69) >DroSec_CAF1 4487 92 + 1 ---------------AUAAUUGCACAUGUUCAGAAA----U-UAUAGCUAUACAUUU---UAUACGUAUGUACAUUGCGCGAUUCGUGUUCAUAGCUCGCUGAACUGAGCAACCA----- ---------------....((((.((.((((((...----.-...((((((((((..---....((((.......))))......))))..))))))..)))))))).))))...----- ( -21.50) >DroSim_CAF1 3428 92 + 1 ---------------AUAAUUGCACAUGUUCAGAAA----U-UAUAGCUAUACAUUU---UAUACGUAUGAACAUUGCGCGAUUCGUGUUCAUAGCUCGCUGAACUGAGCAACCA----- ---------------....((((.((.((((((...----.-...((((((((((..---....((((.......))))......))))..))))))..)))))))).))))...----- ( -21.50) >DroEre_CAF1 3300 96 + 1 ---------------AUAAUUGCACAUGUUCAAAAA----UGUAUCGCUAUAUUUAUAGCUAUAUGCACGAACAUUGCGCGAUUCUUGUUCACAGCUCGCUGAACUGAGCAAUCA----- ---------------..((((((.(((((((....(----((((..(((((....))))))))))....))))).)).)))))).((((((((((....)))...)))))))...----- ( -25.80) >DroPer_CAF1 4507 114 + 1 AGCAUGAUUGUGCACACGAUUGUACCCAUACAUACAUAUAUAUAUGGCUAUA-AGUA---CAUGGGAAUGUGCUACACUUAUUUCGUGCUCAUAGCGCACUGAACUCG--AACCAACGUG .((((....)))).((((..((((.(((((.(((....))).))))).))))-((((---(((....)))))))...........((((.....))))..........--......)))) ( -26.50) >consensus _______________AUAAUUGCACAUGUUCAGAAA____U_UAUAGCUAUACAUUU___UAUACGUAUGUACAUUGCGCGAUUCGUGUUCAUAGCUCGCUGAACUGAGCAACCA_____ .................((((((.((((((((....................................)))))).)).))))))..(((((((((....)))...))))))......... ( -6.98 = -8.46 + 1.48)
Location | 1,188,504 – 1,188,596 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.30 |
Mean single sequence MFE | -25.81 |
Consensus MFE | -11.10 |
Energy contribution | -12.50 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.33 |
Mean z-score | -2.36 |
Structure conservation index | 0.43 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1188504 92 - 27905053 -----UGGUUGCUCAGUUCAGCGAGCUAUGAACACGAAUCGCGCAAUGUACAUACGUAUA---AAAUGUAUAGCAAUA-A----UUUCUGAACAUGUCCAAUUAU--------------- -----((((((..(((((((((((..............))))((..(((((((.......---..)))))))))....-.----....))))).))..)))))).--------------- ( -19.24) >DroSec_CAF1 4487 92 - 1 -----UGGUUGCUCAGUUCAGCGAGCUAUGAACACGAAUCGCGCAAUGUACAUACGUAUA---AAAUGUAUAGCUAUA-A----UUUCUGAACAUGUGCAAUUAU--------------- -----(((((((.((((((((..(((((((....((.....))...(((((....)))))---.....)))))))...-.----...)))))).)).))))))).--------------- ( -23.60) >DroSim_CAF1 3428 92 - 1 -----UGGUUGCUCAGUUCAGCGAGCUAUGAACACGAAUCGCGCAAUGUUCAUACGUAUA---AAAUGUAUAGCUAUA-A----UUUCUGAACAUGUGCAAUUAU--------------- -----(((((((.((((((((..(((((((((((((.....))...))))))(((((...---..))))))))))...-.----...)))))).)).))))))).--------------- ( -26.10) >DroEre_CAF1 3300 96 - 1 -----UGAUUGCUCAGUUCAGCGAGCUGUGAACAAGAAUCGCGCAAUGUUCGUGCAUAUAGCUAUAAAUAUAGCGAUACA----UUUUUGAACAUGUGCAAUUAU--------------- -----(((((((.(((((((((((..((....))....))))..(((((((((..((((........)))).)))).)))----))..))))).)).))))))).--------------- ( -27.70) >DroPer_CAF1 4507 114 - 1 CACGUUGGUU--CGAGUUCAGUGCGCUAUGAGCACGAAAUAAGUGUAGCACAUUCCCAUG---UACU-UAUAGCCAUAUAUAUAUGUAUGUAUGGGUACAAUCGUGUGCACAAUCAUGCU (((.....((--((.(((((........))))).))))....)))..((((((.....((---((((-((((..((((((....))))))))))))))))...))))))........... ( -32.40) >consensus _____UGGUUGCUCAGUUCAGCGAGCUAUGAACACGAAUCGCGCAAUGUACAUACGUAUA___AAAUGUAUAGCUAUA_A____UUUCUGAACAUGUGCAAUUAU_______________ .....(((((((.(((((((((((..............)))).........((((((........)))))).................))))).)).)))))))................ (-11.10 = -12.50 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:00 2006