Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,100,543 – 8,100,703 |
Length | 160 |
Max. P | 0.997743 |
Location | 8,100,543 – 8,100,663 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -26.90 |
Energy contribution | -27.06 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.03 |
Structure conservation index | 0.96 |
SVM decision value | 2.92 |
SVM RNA-class probability | 0.997743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8100543 120 + 27905053 AUUUCACACAUGGGCGCUAAUGAAUUUAAUGAAGUCAUUUUUCUUUAACCGAUUUACAAAACUACUUACAACUGGCGGACCAGUCUGUCCGUCGCCCCAGAACAAGCGAGUUCAUAAUUU ..........((((.((...((((((...(((((........)))))...)))))).................(((((((......)))))))))))))((((......))))....... ( -27.70) >DroSec_CAF1 52201 120 + 1 AUUUCACACAUGGGCGCUAAUGAAUUUAAUGAAGUCAUUUUUCUUUAACCGAUUUACAAAACUACUUACAACUGGCGGACCAGUCAGUCCGUCGCCCCAGAACAAGGGAAUUCAUAAUUU (((((.....((((.((...((((((...(((((........)))))...)))))).................(((((((......))))))))))))).......)))))......... ( -26.00) >DroSim_CAF1 24266 120 + 1 AUUUCACACAUGGGCGCUAAUGAAUUUAAUGAAGUCAUUUUUCUUUAACCGAUUUACAAAACUACUUACAACUGGCGGACCAGUCAGUCAGUCGCCCCAGAACAAGCGAGUUCAUAAUUU ...........(((((((..((((((...(((((........)))))...))))))..............((((((......)))))).)).)))))..((((......))))....... ( -25.10) >DroEre_CAF1 27269 120 + 1 AUUUCACACAUGGGCGCUAAUGAAUUUAAUGAAGUCAUUUUUCUUUAACCGAUUUACAAAACUACUUACAACUGGCGGACCAGUGAGUCCGCCGCCCCAGAACAAGCGAGUUCAUAAUUU ..........((((.((...((((((...(((((........)))))...)))))).................(((((((......)))))))))))))((((......))))....... ( -30.60) >DroYak_CAF1 20633 120 + 1 AUUUCACACAUGGGCGCUAAUGAAUUUAAUGAAGUCAUUUUUCUUUAACCGAUUUACAAAACUACUUACAACUGGCGGACCAGUCAGUCCGCCGCCCCAGAACAAGCGAGUUCAUAAUUU ..........((((.((...((((((...(((((........)))))...)))))).................(((((((......)))))))))))))((((......))))....... ( -30.60) >consensus AUUUCACACAUGGGCGCUAAUGAAUUUAAUGAAGUCAUUUUUCUUUAACCGAUUUACAAAACUACUUACAACUGGCGGACCAGUCAGUCCGUCGCCCCAGAACAAGCGAGUUCAUAAUUU ..........((((.((...((((((...(((((........)))))...)))))).................(((((((......)))))))))))))((((......))))....... (-26.90 = -27.06 + 0.16)
Location | 8,100,583 – 8,100,703 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -31.02 |
Energy contribution | -30.86 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.09 |
Mean z-score | -1.88 |
Structure conservation index | 0.84 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8100583 120 - 27905053 UGGCCGAGAUCUCUUUGUUAGCACCAUGAUUAAUGAUGCAAAAUUAUGAACUCGCUUGUUCUGGGGCGACGGACAGACUGGUCCGCCAGUUGUAAGUAGUUUUGUAAAUCGGUUAAAGAA (((((((((((....((....))....)))).....(((((((((((..((((((((......))))))......((((((....))))))))..)))))))))))..)))))))..... ( -34.70) >DroSec_CAF1 52241 120 - 1 UGGCCGAGAUCUCUUUGUUAGCACCAUGAUUAAUGAUGCAAAAUUAUGAAUUCCCUUGUUCUGGGGCGACGGACUGACUGGUCCGCCAGUUGUAAGUAGUUUUGUAAAUCGGUUAAAGAA (((((((((((....((....))....)))).....(((((((((((....(((.(((((....))))).)))..((((((....))))))....)))))))))))..)))))))..... ( -34.20) >DroSim_CAF1 24306 120 - 1 UGGCCGAGAUCUCUUUGUUAGCACCAUGAUUAAUGAUGCAAAAUUAUGAACUCGCUUGUUCUGGGGCGACUGACUGACUGGUCCGCCAGUUGUAAGUAGUUUUGUAAAUCGGUUAAAGAA (((((((((((....((....))....)))).....(((((((((((..((((((((......))))))......((((((....))))))))..)))))))))))..)))))))..... ( -34.60) >DroEre_CAF1 27309 120 - 1 UGGCCGAGAUCUCUUUGUUAGGACCGUGAUUAAUGAUGCAAAAUUAUGAACUCGCUUGUUCUGGGGCGGCGGACUCACUGGUCCGCCAGUUGUAAGUAGUUUUGUAAAUCGGUUAAAGAA (((((((((((((((....))))....)))).....(((((((((((((((......))))((.(((((((((((....)))))))).))).)).)))))))))))..)))))))..... ( -39.60) >DroYak_CAF1 20673 120 - 1 UGGCCGAGAUCUCUUUGUUAGGGCCAUGAUUAAUGAUGCAAAAUUAUGAACUCGCUUGUUCUGGGGCGGCGGACUGACUGGUCCGCCAGUUGUAAGUAGUUUUGUAAAUCGGUUAAAGAA (((((..(((......)))..)))))((((..((..(((((((((((((((......))))((.(((((((((((....)))))))).))).)).))))))))))).))..))))..... ( -40.90) >consensus UGGCCGAGAUCUCUUUGUUAGCACCAUGAUUAAUGAUGCAAAAUUAUGAACUCGCUUGUUCUGGGGCGACGGACUGACUGGUCCGCCAGUUGUAAGUAGUUUUGUAAAUCGGUUAAAGAA (((((((.................(((.....))).(((((((((((..((((((((......))))))......((((((....))))))))..)))))))))))..)))))))..... (-31.02 = -30.86 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:07 2006