Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,099,401 – 8,099,521 |
Length | 120 |
Max. P | 0.700114 |
Location | 8,099,401 – 8,099,521 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.17 |
Mean single sequence MFE | -30.56 |
Consensus MFE | -25.24 |
Energy contribution | -26.76 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.10 |
Mean z-score | -1.44 |
Structure conservation index | 0.83 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8099401 120 + 27905053 AUGCCUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACGGUAGAACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUAUGAGCGUGG .......(((((.(((...((((....(((......))).))))........((((...(((((((........))))))).)))).....)))))))).........((((....)))) ( -33.30) >DroSec_CAF1 51046 120 + 1 AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACGGUAGAACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUAUGAGCGUGG ..((((.(((((.(((...((((....(((......))).))))........((((...(((((((........))))))).)))).....))))))))(((.......)))..)))).. ( -33.90) >DroSim_CAF1 23117 120 + 1 AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACGGUAGAACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUAUGAGCGUGG ..((((.(((((.(((...((((....(((......))).))))........((((...(((((((........))))))).)))).....))))))))(((.......)))..)))).. ( -33.90) >DroEre_CAF1 26097 120 + 1 AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACAGCAGCACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUACGAGUGUGG .......(((((.(((...((((....(((......))).))))...............(((((((........)))))))..........)))))))).........((((....)))) ( -29.10) >DroYak_CAF1 19471 107 + 1 AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCUUCAACAGCAGAACUUGGGAAUCCGAGCUCGGGUA-------------GCCAAUAAAAUUACUAUGAGUGUGG ..((.....))(((((...((((....(((......))).)))).................((((..(((((....))))).-------------.))))...............))))) ( -22.60) >consensus AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACGGUAGAACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUAUGAGCGUGG .......(((((.(((...((((....(((......))).))))........((((...(((((((........))))))).)))).....)))))))).........((((....)))) (-25.24 = -26.76 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:57 2006